Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_663791 16 5631 NP_663783 16 5631 NP_001497 16 7355 XP_006711403 16 7355 NP_653300 16 7355 NP_056110 15 9605 NP_778203 15 9605 NP_008850 15 9605 NP_056968 15 9605 NP_002965 15 9605 XP_005258159 15 9605 XP_006722384 15 9605>NP_663791 Length = 192 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLTSALAV 9 SLT+ALAV Sbjct: 163 SLTAALAV 170>NP_663783 Length = 191 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLTSALAV 9 SLT+ALAV Sbjct: 162 SLTAALAV 169>NP_001497 Length = 356 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SLTSALA 8 SLTSALA Sbjct: 330 SLTSALA 336>XP_006711403 Length = 961 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLTSALAV 9 SLTS LAV Sbjct: 212 SLTSGLAV 219>NP_653300 Length = 1029 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLTSALAV 9 SLTS LAV Sbjct: 280 SLTSGLAV 287>NP_056110 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ISLTSALA 8 I++TSALA Sbjct: 1081 INITSALA 1088>NP_778203 Length = 1007 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISLTSALAV 9 IS+T+ LAV Sbjct: 13 ISITTCLAV 21>NP_008850 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISLTSALAV 9 IS+TSAL + Sbjct: 32 ISITSALGM 40>NP_056968 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISLTSALAV 9 ISL+ ALA+ Sbjct: 449 ISLSGALAI 457>NP_002965 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISLTSALAV 9 IS+TSAL + Sbjct: 32 ISITSALGM 40>XP_005258159 Length = 1817 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ISLTSALA 8 I++TSALA Sbjct: 893 INITSALA 900>XP_006722384 Length = 1877 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ISLTSALA 8 I++TSALA Sbjct: 953 INITSALA 960Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.121 0.260 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 200,609 Number of extensions: 156 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |