Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001234926 17 4312 NP_002947 17 4312 NP_937883 17 4312 XP_006719618 17 4312 XP_006719617 17 4312 XP_006719616 17 4312 XP_006719615 17 4312 XP_006719614 17 4312 XP_005253652 17 4312 XP_005253651 17 4312 XP_005253650 17 4312 NP_000411 15 9605 XP_005277045 15 9605 XP_005250050 15 9605>NP_001234926 Length = 1438 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1234 SISITSAL 1241>NP_002947 Length = 1427 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1223 SISITSAL 1230>NP_937883 Length = 1392 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1188 SISITSAL 1195>XP_006719618 Length = 1394 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1188 SISITSAL 1195>XP_006719617 Length = 1401 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1195 SISITSAL 1202>XP_006719616 Length = 1405 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1199 SISITSAL 1206>XP_006719615 Length = 1429 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1223 SISITSAL 1230>XP_006719614 Length = 1440 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1234 SISITSAL 1241>XP_005253652 Length = 1440 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1234 SISITSAL 1241>XP_005253651 Length = 1440 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1234 SISITSAL 1241>XP_005253650 Length = 1440 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SISLTSAL 9 SIS+TSAL Sbjct: 1234 SISITSAL 1241>NP_000411 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISISLTSAL 9 +SIS+TS L Sbjct: 274 LSISITSRL 282>XP_005277045 Length = 744 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISISLTSAL 9 +SIS+TS L Sbjct: 286 LSISITSRL 294>XP_005250050 Length = 744 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISISLTSAL 9 +SIS+TS L Sbjct: 286 LSISITSRL 294Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.122 0.258 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 207,873 Number of extensions: 151 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |