Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 3301 NP_006429 17 3301 XP_005250813 17 3301 XP_006716142 17 3301 XP_005250088 17 3301 XP_006716141 17 3301 XP_005250085 17 3301 XP_006716140 17 3301 XP_005250084 17 3301 XP_005250083 17 3301 XP_005250082 17 3301 NP_005493 17 4312 NP_001128726 17 4312 XP_005251837 17 4312 XP_005251835 17 4312 XP_006717058 17 4312 XP_005251833 17 4312 XP_005251831 17 4312 XP_005251830 17 4312 XP_005245941 17 4312 NP_659414 16 5631 NP_001182144 16 5631 XP_005244990 16 5631 XP_005244988 16 5631 XP_006711256 16 5631 XP_006711255 16 5631 NP_000615 15 9605 NP_689646 15 9605 NP_001010870 15 9605 NP_940841 15 9605 NP_001161831 15 9605 NP_001003845 15 9605 XP_006718830 15 9605 XP_005246599 15 9605>NP_733751 Length = 4911 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1448 ISDDLAKSV 1456>NP_006429 Length = 277 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ISDYLAKS 8 I+DY+AKS Sbjct: 195 IADYVAKS 202>XP_005250813 Length = 208 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ISDYLAKS 8 I+DY+AKS Sbjct: 126 IADYVAKS 133>XP_006716142 Length = 4927 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_005250088 Length = 4928 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_006716141 Length = 4959 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_005250085 Length = 4979 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_006716140 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_005250084 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>XP_005250083 Length = 4982 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1448 ISDDLAKSV 1456>XP_005250082 Length = 4983 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ISD LAKSV Sbjct: 1449 ISDDLAKSV 1457>NP_005493 Length = 2261 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1505 ISDYLVKT 1512>NP_001128726 Length = 505 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DYLAKSV 9 DYLAK+V Sbjct: 471 DYLAKNV 477>XP_005251837 Length = 1659 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1507 ISDYLVKT 1514>XP_005251835 Length = 2074 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1507 ISDYLVKT 1514>XP_006717058 Length = 2100 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1507 ISDYLVKT 1514>XP_005251833 Length = 2203 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1447 ISDYLVKT 1454>XP_005251831 Length = 2263 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1507 ISDYLVKT 1514>XP_005251830 Length = 2263 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISDYLAKS 8 ISDYL K+ Sbjct: 1507 ISDYLVKT 1514>XP_005245941 Length = 503 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DYLAKSV 9 DYLAK+V Sbjct: 469 DYLAKNV 475>NP_659414 Length = 426 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 114 LADYLAKEL 122>NP_001182144 Length = 775 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 114 LADYLAKEL 122>XP_005244990 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 104 LADYLAKEL 112>XP_005244988 Length = 755 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 114 LADYLAKEL 122>XP_006711256 Length = 765 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 104 LADYLAKEL 112>XP_006711255 Length = 765 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISDYLAKSV 9 ++DYLAK + Sbjct: 104 LADYLAKEL 112>NP_000615 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ISDYLAK 7 I+DY+AK Sbjct: 172 INDYVAK 178>NP_689646 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SDYLAKSV 9 SD+L KS+ Sbjct: 142 SDFLIKSI 149>NP_001010870 Length = 2096 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SDYLAKSV 9 ++YL+KSV Sbjct: 1192 TEYLSKSV 1199>NP_940841 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SDYLAKSV 9 SD+L KS+ Sbjct: 142 SDFLIKSI 149>NP_001161831 Length = 2066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SDYLAKSV 9 ++YL+KSV Sbjct: 1192 TEYLSKSV 1199>NP_001003845 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SDYLAKSV 9 SD+LAK V Sbjct: 368 SDHLAKHV 375>XP_006718830 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SDYLAKSV 9 SD+L KS+ Sbjct: 142 SDFLIKSI 149>XP_005246599 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SDYLAKSV 9 SD+LAK V Sbjct: 412 SDHLAKHV 419Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.128 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 391,102 Number of extensions: 232 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |