Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_060712 17 4312 NP_001121367 17 4312 NP_001121368 17 4312 NP_071912 17 4312 NP_660207 16 7355 NP_001071096 16 7355 NP_057106 16 7355 NP_001230700 16 7355 NP_001001671 16 7355 NP_001230701 16 7355 XP_005269600 16 7355 XP_006711425 16 7355 NP_000675 15 9605 NP_001265713 15 9605 NP_001430 15 9605 NP_001248370 15 9605 NP_001248371 15 9605 NP_001248369 15 9605 NP_001028197 15 9605 NP_005818 15 9605 NP_000031 15 9605 XP_005256986 15 9605 XP_006721695 15 9605 XP_005270679 15 9605 XP_005270678 15 9605>NP_060712 Length = 570 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 +R LLV+AG Sbjct: 35 LRALLVLAG 43>NP_001121367 Length = 424 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RVLLVIAG 9 RVL+V+AG Sbjct: 207 RVLMVLAG 214>NP_001121368 Length = 424 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RVLLVIAG 9 RVL+V+AG Sbjct: 207 RVLMVLAG 214>NP_071912 Length = 424 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RVLLVIAG 9 RVL+V+AG Sbjct: 207 RVLMVLAG 214>NP_660207 Length = 217 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RVLLVIAG 9 R+LLVI G Sbjct: 192 RILLVILG 199>NP_001071096 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IRVLLVIAG 9 +RV++++AG Sbjct: 30 LRVIILVAG 38>NP_057106 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IRVLLVIAG 9 +RV++++AG Sbjct: 30 LRVIILVAG 38>NP_001230700 Length = 190 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IRVLLVIAG 9 +RV++++AG Sbjct: 30 LRVIILVAG 38>NP_001001671 Length = 1313 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 + VLL++AG Sbjct: 406 LAVLLIVAG 414>NP_001230701 Length = 195 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IRVLLVIAG 9 +RV++++AG Sbjct: 30 LRVIILVAG 38>XP_005269600 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RVLLVIAG 9 R+LLVI G Sbjct: 199 RILLVILG 206>XP_006711425 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IRVLLVIAG 9 +RV++++AG Sbjct: 30 LRVIILVAG 38>NP_000675 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLLVIAG 9 VLL++AG Sbjct: 69 VLLIVAG 75>NP_001265713 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLLVIAG 9 VLL++AG Sbjct: 77 VLLIVAG 83>NP_001430 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34>NP_001248370 Length = 338 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 34 ILVLLLVAG 42>NP_001248371 Length = 147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34>NP_001248369 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34>NP_001028197 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34>NP_005818 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLLVIAG 9 VLL++AG Sbjct: 181 VLLIVAG 187>NP_000031 Length = 99 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RVLLVIA 8 RVLLV+A Sbjct: 4 RVLLVVA 10>XP_005256986 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLLVIAG 9 VLL++AG Sbjct: 77 VLLIVAG 83>XP_006721695 Length = 393 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLLVIAG 9 VLL++AG Sbjct: 215 VLLIVAG 221>XP_005270679 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34>XP_005270678 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRVLLVIAG 9 I VLL++AG Sbjct: 26 ILVLLLVAG 34Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.346 0.166 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 273,389 Number of extensions: 241 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |