Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005253405 17 4312 NP_777601 17 4312 NP_055753 16 5631 XP_006719356 16 5631 XP_006719355 16 5631 XP_006719354 16 5631 XP_006719353 16 5631 NP_001245200 16 7355 NP_000240 16 7355 NP_001161089 16 7355 NP_056110 16 7355 NP_002537 16 7355 XP_005258159 16 7355 XP_006722384 16 7355 XP_005265218 16 7355 NP_057289 15 9605 NP_001008895 15 9605 NP_001265442 15 9605 NP_001265443 15 9605 NP_003580 15 9605 NP_005133 15 9605 XP_005273967 15 9605>XP_005253405 Length = 1463 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRSIFGMLL 9 + SIFG+LL Sbjct: 1374 LSSIFGLLL 1382>NP_777601 Length = 1453 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IRSIFGMLL 9 + SIFG+LL Sbjct: 1364 LSSIFGLLL 1372>NP_055753 Length = 919 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RSIFG +L Sbjct: 340 RSIFGSML 347>XP_006719356 Length = 708 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RSIFG +L Sbjct: 340 RSIFGSML 347>XP_006719355 Length = 920 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RSIFG +L Sbjct: 340 RSIFGSML 347>XP_006719354 Length = 959 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RSIFG +L Sbjct: 340 RSIFGSML 347>XP_006719353 Length = 960 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RSIFG +L Sbjct: 340 RSIFGSML 347>NP_001245200 Length = 687 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IRSIFG 6 IRSIFG Sbjct: 216 IRSIFG 221>NP_000240 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IRSIFG 6 IRSIFG Sbjct: 216 IRSIFG 221>NP_001161089 Length = 658 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IRSIFG 6 IRSIFG Sbjct: 118 IRSIFG 123>NP_056110 Length = 2005 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIFGMLL 9 ++FGMLL Sbjct: 1825 TVFGMLL 1831>NP_002537 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIFGMLL 9 S+FG+LL Sbjct: 167 SVFGLLL 173>XP_005258159 Length = 1817 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIFGMLL 9 ++FGMLL Sbjct: 1637 TVFGMLL 1643>XP_006722384 Length = 1877 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIFGMLL 9 ++FGMLL Sbjct: 1697 TVFGMLL 1703>XP_005265218 Length = 687 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IRSIFG 6 IRSIFG Sbjct: 216 IRSIFG 221>NP_057289 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIFGMLL 9 S+FG+LL Sbjct: 2 SLFGLLL 8>NP_001008895 Length = 759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IRSIFGML 8 +RS+ GML Sbjct: 214 LRSLLGML 221>NP_001265442 Length = 659 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IRSIFGML 8 +RS+ GML Sbjct: 114 LRSLLGML 121>NP_001265443 Length = 667 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IRSIFGML 8 +RS+ GML Sbjct: 122 LRSLLGML 129>NP_003580 Length = 659 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IRSIFGML 8 +RS+ GML Sbjct: 114 LRSLLGML 121>NP_005133 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RS+FG +L Sbjct: 196 RSLFGQVL 203>XP_005273967 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RSIFGMLL 9 RS+FG +L Sbjct: 171 RSLFGQVL 178Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.352 0.166 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 355,858 Number of extensions: 441 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |