Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_997290 17 2528 NP_817123 17 4312 NP_073600 16 5631 NP_001128567 16 5631 NP_742056 16 7355 NP_001275504 16 7355 NP_001275503 16 7355 NP_742055 16 7355 NP_742057 16 7355 NP_000494 16 7355 NP_851999 16 7355 NP_001185461 16 7355 NP_001157861 16 7355 NP_001157860 16 7355 NP_001157859 16 7355 NP_001157858 16 7355 NP_060217 16 7355 NP_057424 16 7355 NP_065741 16 7355 NP_001185462 16 7355 XP_006716659 16 7355 XP_005251053 16 7355 XP_005251052 16 7355 XP_006716658 16 7355 XP_005251051 16 7355 XP_005251050 16 7355 XP_006716657 16 7355 XP_006716500 16 7355 XP_006716499 16 7355 XP_005251241 16 7355 XP_006716498 16 7355 XP_005251239 16 7355 NP_060472 16 7355 XP_006720114 15 9605 XP_006710110 15 9605 NP_001001872 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RMTSSNTQ 9 RMTSSNTQ Sbjct: 1869 RMTSSNTQ 1876>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 RMTSSNTQ 9 RMTSSNTQ Sbjct: 1664 RMTSSNTQ 1671>NP_997290 Length = 438 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 IRMTSSN Sbjct: 188 IRMTSSN 194>NP_817123 Length = 1040 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MTSSNTQ 9 MT+SNTQ Sbjct: 700 MTASNTQ 706>NP_073600 Length = 1204 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RMTSSNTQ 9 R+T+SNT+ Sbjct: 547 RLTASNTE 554>NP_001128567 Length = 1204 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RMTSSNTQ 9 R+T+SNT+ Sbjct: 547 RLTASNTE 554>NP_742056 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 235 MTSSNT 240>NP_001275504 Length = 470 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 118 MTSSNT 123>NP_001275503 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 234 MTSSNT 239>NP_742055 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 240 MTSSNT 245>NP_742057 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 207 MTSSNT 212>NP_000494 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 240 MTSSNT 245>NP_851999 Length = 839 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 295 KMTGSNTE 302>NP_001185461 Length = 874 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 303 KMTGSNTE 310>NP_001157861 Length = 1391 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_001157860 Length = 1504 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_001157859 Length = 1509 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 +RMTS+N Sbjct: 1056 VRMTSAN 1062>NP_001157858 Length = 1609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_060217 Length = 2542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TSSNTQ 9 TSSNTQ Sbjct: 2073 TSSNTQ 2078>NP_057424 Length = 1601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IRMTSSN 7 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_065741 Length = 2617 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TSSNTQ 9 TSSNTQ Sbjct: 2073 TSSNTQ 2078>NP_001185462 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 302 KMTGSNTE 309>XP_006716659 Length = 653 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 303 KMTGSNTE 310>XP_005251053 Length = 826 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 233 KMTGSNTE 240>XP_005251052 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 235 KMTGSNTE 242>XP_006716658 Length = 847 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 303 KMTGSNTE 310>XP_005251051 Length = 888 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 295 KMTGSNTE 302>XP_005251050 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 302 KMTGSNTE 309>XP_006716657 Length = 896 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 303 KMTGSNTE 310>XP_006716500 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 123 MTSSNT 128>XP_006716499 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 207 MTSSNT 212>XP_005251241 Length = 571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 219 MTSSNT 224>XP_006716498 Length = 591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 239 MTSSNT 244>XP_005251239 Length = 621 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 MTSSNT 8 MTSSNT Sbjct: 269 MTSSNT 274>NP_060472 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT SNT+ Sbjct: 302 KMTGSNTE 309>XP_006720114 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT+ NTQ Sbjct: 259 QMTADNTQ 266>XP_006710110 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 RMTSSNT 8 ++TSSNT Sbjct: 101 KLTSSNT 107>NP_001001872 Length = 774 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RMTSSNTQ 9 +MT+ NTQ Sbjct: 259 QMTADNTQ 266Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.105 0.245 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 306,016 Number of extensions: 361 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |