Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1935 NP_001035957 18 1935 XP_006721990 18 1935 XP_006721989 18 1935 XP_005258041 18 1935 XP_006721988 18 1935 XP_006721987 18 1935 XP_006721986 18 1935 XP_005258040 18 1935 XP_006721985 18 1935 NP_055859 17 3301 NP_001668 17 4312 NP_114475 17 4312 NP_061742 17 4312 NP_001188406 16 5631 NP_060562 16 5631 NP_690851 16 5631 XP_006721355 16 5631 XP_006721354 16 5631 XP_006721353 16 5631 XP_006721352 16 5631 XP_005255298 16 5631 NP_001601 16 7355 XP_005253041 16 7355 NP_055513 15 9605 NP_064569 15 9605 NP_001072 15 9605 XP_005263972 15 9605 XP_005263971 15 9605 XP_006711904 15 9605>NP_000258 Length = 2818 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2594 IQALLLTVL 2602>NP_001035957 Length = 2839 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2615 IQALLLTVL 2623>XP_006721990 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2625 IQALLLTVL 2633>XP_006721989 Length = 2823 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2625 IQALLLTVL 2633>XP_005258041 Length = 2836 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2594 IQALLLTVL 2602>XP_006721988 Length = 2846 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2604 IQALLLTVL 2612>XP_006721987 Length = 2849 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2625 IQALLLTVL 2633>XP_006721986 Length = 2854 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2612 IQALLLTVL 2620>XP_005258040 Length = 2857 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2615 IQALLLTVL 2623>XP_006721985 Length = 2867 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 IQ LLLTVL Sbjct: 2625 IQALLLTVL 2633>NP_055859 Length = 613 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 +QVLLLT++ Sbjct: 514 VQVLLLTMM 522>NP_001668 Length = 303 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 IQVLLLTV 8 IQV+LLT+ Sbjct: 54 IQVMLLTI 61>NP_114475 Length = 818 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 QVLLLTVL 9 QVLLLT+L Sbjct: 13 QVLLLTLL 20>NP_061742 Length = 932 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 QVLLLTVL 9 QVLLLT+L Sbjct: 13 QVLLLTLL 20>NP_001188406 Length = 518 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>NP_060562 Length = 525 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>NP_690851 Length = 280 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 +QVLLL VL Sbjct: 7 LQVLLLLVL 15>XP_006721355 Length = 304 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>XP_006721354 Length = 480 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>XP_006721353 Length = 484 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>XP_006721352 Length = 487 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IQVLLLTVL 9 ++VLL+TVL Sbjct: 10 LKVLLITVL 18>XP_005255298 Length = 280 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 +QVLLL VL Sbjct: 7 LQVLLLLVL 15>NP_001601 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLLLTVL 9 VLLLTVL Sbjct: 397 VLLLTVL 403>XP_005253041 Length = 236 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 VLLLTVL 9 VLLLTVL Sbjct: 210 VLLLTVL 216>NP_055513 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLLLTVL 9 VLLLT+L Sbjct: 703 VLLLTIL 709>NP_064569 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 + +LL+TVL Sbjct: 184 LHILLITVL 192>NP_001072 Length = 3623 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 IQVLLLT 7 +QVLLLT Sbjct: 1366 LQVLLLT 1372>XP_005263972 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 + +LL+TVL Sbjct: 184 LHILLITVL 192>XP_005263971 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IQVLLLTVL 9 + +LL+TVL Sbjct: 184 LHILLITVL 192>XP_006711904 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLLLTVL 9 VLLLT+L Sbjct: 526 VLLLTIL 532Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.161 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 304,531 Number of extensions: 286 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |