Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001261 20 299 XP_005271924 20 299 XP_005271923 20 299 XP_005254203 16 5631 NP_055488 16 5631 NP_055244 16 7355 NP_001364 15 9605 NP_003897 15 9605 NP_787074 15 9605 NP_055528 15 9605 NP_005732 15 9605 XP_006724128 15 9605 XP_006724127 15 9605 XP_005261262 15 9605 XP_005261261 15 9605 XP_005261263 15 9605 XP_005261260 15 9605 XP_006720898 15 9605 XP_006720897 15 9605 XP_006720896 15 9605 XP_006720895 15 9605 XP_006720894 15 9605 XP_005255088 15 9605 XP_006711798 15 9605 NP_001968 15 9605>NP_001261 Length = 1710 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INNRNMIRT 9 IN+RNMIRT Sbjct: 565 INSRNMIRT 573>XP_005271924 Length = 1710 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INNRNMIRT 9 IN+RNMIRT Sbjct: 565 INSRNMIRT 573>XP_005271923 Length = 1798 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INNRNMIRT 9 IN+RNMIRT Sbjct: 565 INSRNMIRT 573>XP_005254203 Length = 848 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 INNRNMI 7 INNRN + Sbjct: 840 INNRNQV 846>NP_055488 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 INNRNM 6 +NNRNM Sbjct: 221 LNNRNM 226>NP_055244 Length = 984 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 INNRNM 6 INNRN+ Sbjct: 443 INNRNL 448>NP_001364 Length = 4515 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NRNMIRT 9 N N+IRT Sbjct: 448 NENLIRT 454>NP_003897 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>NP_787074 Length = 459 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 NNRNMIRT 9 NN NM+ T Sbjct: 296 NNSNMVGT 303>NP_055528 Length = 233 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 INNRNM 6 INNRN+ Sbjct: 190 INNRNV 195>NP_005732 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 389 NNSNLIR 395>XP_006724128 Length = 1483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 277 INNENMTK 284>XP_006724127 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>XP_005261262 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>XP_005261261 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>XP_005261263 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>XP_005261260 Length = 1980 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 INNRNMIR 8 INN NM + Sbjct: 774 INNENMTK 781>XP_006720898 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 185 NNSNLIR 191>XP_006720897 Length = 479 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 185 NNSNLIR 191>XP_006720896 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 304 NNSNLIR 310>XP_006720895 Length = 644 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 350 NNSNLIR 356>XP_006720894 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 376 NNSNLIR 382>XP_005255088 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 NNRNMIR 8 NN N+IR Sbjct: 389 NNSNLIR 395>XP_006711798 Length = 4586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 NRNMIRT 9 N N+IRT Sbjct: 448 NENLIRT 454>NP_001968 Length = 957 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 INNRNMIR 8 +NNRN+ R Sbjct: 884 LNNRNLGR 891Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 451,274 Number of extensions: 554 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |