Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1135 NP_671714 18 1135 XP_006715890 18 1135 XP_005250160 18 1135 XP_005250159 18 1135 NP_001257903 17 4312 XP_006721269 17 4312 NP_065988 16 5631 NP_001135791 16 5631 NP_079479 16 5631 XP_005267986 16 5631 NP_000391 16 7355 NP_008971 16 7355 NP_653333 16 7355 NP_065856 16 7355 XP_005258696 16 7355 XP_005258523 16 7355 XP_005258522 16 7355 XP_005258520 16 7355 XP_005258521 16 7355 XP_005258519 16 7355 XP_005258518 16 7355 XP_005258516 16 7355 XP_006722575 16 7355 NP_004422 15 9605 NP_055742 15 9605 NP_001166126 15 9605 NP_001162118 15 9605 NP_055467 15 9605 NP_060730 15 9605 NP_006026 15 9605 XP_005274525 15 9605 XP_005268287 15 9605 XP_005268286 15 9605 XP_005268285 15 9605 XP_005268284 15 9605 XP_005245809 15 9605 XP_005245808 15 9605 XP_003846672 15 9605>NP_005742 Length = 3907 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INDEISVSS 9 I+DEISVSS Sbjct: 1565 IHDEISVSS 1573>NP_671714 Length = 3899 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INDEISVSS 9 I+DEISVSS Sbjct: 1565 IHDEISVSS 1573>XP_006715890 Length = 3860 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INDEISVSS 9 I+DEISVSS Sbjct: 1565 IHDEISVSS 1573>XP_005250160 Length = 3939 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INDEISVSS 9 I+DEISVSS Sbjct: 1565 IHDEISVSS 1573>XP_005250159 Length = 3952 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 INDEISVSS 9 I+DEISVSS Sbjct: 1565 IHDEISVSS 1573>NP_001257903 Length = 5121 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 INDEISVSS 9 I+DEI +SS Sbjct: 1286 ISDEIKISS 1294>XP_006721269 Length = 5138 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 INDEISVSS 9 I+DEI +SS Sbjct: 1303 ISDEIKISS 1311>NP_065988 Length = 2048 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 NDE SVSS Sbjct: 950 NDEKSVSS 957>NP_001135791 Length = 622 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 N E+SVSS Sbjct: 270 NSEVSVSS 277>NP_079479 Length = 721 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 N E+SVSS Sbjct: 270 NSEVSVSS 277>XP_005267986 Length = 2022 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 NDE SVSS Sbjct: 924 NDEKSVSS 931>NP_000391 Length = 760 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 NDEISVSS 9 ND++++SS Sbjct: 499 NDQVAISS 506>NP_008971 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 263 INEEISV 269>NP_653333 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 163 INEEISV 169>NP_065856 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 INDEISVSS 9 +ND+ISV + Sbjct: 177 LNDQISVQN 185>XP_005258696 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 NDEISVSS 9 ND++++SS Sbjct: 475 NDQVAISS 482>XP_005258523 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 163 INEEISV 169>XP_005258522 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 163 INEEISV 169>XP_005258520 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 163 INEEISV 169>XP_005258521 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 163 INEEISV 169>XP_005258519 Length = 767 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 174 INEEISV 180>XP_005258518 Length = 777 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 174 INEEISV 180>XP_005258516 Length = 866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 INDEISV 7 IN+EISV Sbjct: 263 INEEISV 269>XP_006722575 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 INDEISVSS 9 +ND+ISV + Sbjct: 221 LNDQISVQN 229>NP_004422 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DEISVSS 9 DEI+VSS Sbjct: 148 DEITVSS 154>NP_055742 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 ND +S+SS Sbjct: 1007 NDPLSISS 1014>NP_001166126 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 INDEISVSS 9 IND SVS+ Sbjct: 234 INDAFSVSA 242>NP_001162118 Length = 1004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 ND +S+SS Sbjct: 977 NDPLSISS 984>NP_055467 Length = 963 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 N E+SVSS Sbjct: 540 NPELSVSS 547>NP_060730 Length = 465 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 INDEISVSS 9 IND SVS+ Sbjct: 168 INDAFSVSA 176>NP_006026 Length = 1711 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 +DE SVSS Sbjct: 1151 DDEFSVSS 1158>XP_005274525 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 ND +S+SS Sbjct: 958 NDPLSISS 965>XP_005268287 Length = 1490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 +DE SVSS Sbjct: 1168 DDEFSVSS 1175>XP_005268286 Length = 1685 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 +DE SVSS Sbjct: 1125 DDEFSVSS 1132>XP_005268285 Length = 1702 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 +DE SVSS Sbjct: 1142 DDEFSVSS 1149>XP_005268284 Length = 1728 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 +DE SVSS Sbjct: 1168 DDEFSVSS 1175>XP_005245809 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DEISVSS 9 DEI+VSS Sbjct: 94 DEITVSS 100>XP_005245808 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DEISVSS 9 DEI+VSS Sbjct: 137 DEITVSS 143>XP_003846672 Length = 830 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NDEISVSS 9 N E+SVSS Sbjct: 540 NPELSVSS 547Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.116 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 461,706 Number of extensions: 641 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |