Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_003290 16 7355 NP_001634 16 7355 NP_659490 16 7355 NP_000851 15 9605 NP_001139288 15 9605 NP_001243234 15 9605 NP_057329 15 9605 NP_775321 15 9605 NP_056325 15 9605 NP_001106649 15 9605 NP_619728 15 9605 NP_006590 15 9605 NP_619727 15 9605 NP_775322 15 9605 NP_620140 15 9605 XP_005256653 15 9605 XP_005256652 15 9605 XP_005255834 15 9605 XP_006721188 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ILVKNAGTQ 9 ILVKNAG Q Sbjct: 2797 ILVKNAGIQ 2805>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ILVKNAGTQ 9 ILVKNAG Q Sbjct: 2789 ILVKNAGIQ 2797>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ILVKNAGTQ 9 ILVKNAG Q Sbjct: 2750 ILVKNAGIQ 2758>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ILVKNAGTQ 9 ILVKNAG Q Sbjct: 2829 ILVKNAGIQ 2837>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ILVKNAGTQ 9 ILVKNAG Q Sbjct: 2842 ILVKNAGIQ 2850>NP_003290 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LVKNAGT 8 LVKN GT Sbjct: 159 LVKNLGT 165>NP_001634 Length = 100 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LVKNAGTQ 9 L+K AGT+ Sbjct: 75 LIKKAGTE 82>NP_659490 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ILVKNAGTQ 9 ++VK AG Q Sbjct: 33 VIVKTAGNQ 41>NP_000851 Length = 266 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 87 ILVNNAG 93>NP_001139288 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 87 ILVNNAG 93>NP_001243234 Length = 143 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 87 ILVNNAG 93>NP_057329 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 116 ILVNNAG 122>NP_775321 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 957 VQNSGTQ 963>NP_056325 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 138 ILVNNAG 144>NP_001106649 Length = 1548 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 1050 VQNSGTQ 1056>NP_619728 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 957 VQNSGTQ 963>NP_006590 Length = 1531 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 1033 VQNSGTQ 1039>NP_619727 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 1051 VQNSGTQ 1057>NP_775322 Length = 1455 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 957 VQNSGTQ 963>NP_620140 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILVKN G Sbjct: 154 ILVKNRG 160>XP_005256653 Length = 310 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 123 ILVNNAG 129>XP_005256652 Length = 372 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ILVKNAG 7 ILV NAG Sbjct: 185 ILVNNAG 191>XP_005255834 Length = 1264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 766 VQNSGTQ 772>XP_006721188 Length = 1484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VKNAGTQ 9 V+N+GTQ Sbjct: 986 VQNSGTQ 992Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.130 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 476,391 Number of extensions: 685 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |