Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 665 XP_005262424 19 665 NP_006527 17 3301 NP_660320 16 5631 NP_998818 16 5631 NP_001103132 16 5631 XP_005272989 16 5631 NP_006176 16 7355 NP_001273490 16 7355 XP_006718633 16 7355 XP_006718632 16 7355 XP_006718631 16 7355 XP_006718630 16 7355 XP_006718629 16 7355 XP_006718628 16 7355 XP_006718627 16 7355 XP_006718626 16 7355 XP_006718625 16 7355 NP_055861 15 9605 NP_003882 15 9605 NP_001243063 15 9605 NP_003288 15 9605 NP_003105 15 9605 NP_757367 15 9605 NP_112196 15 9605 NP_001189352 15 9605 XP_006719648 15 9605 XP_006719647 15 9605 XP_005269190 15 9605 XP_005272230 15 9605 XP_005272229 15 9605 XP_005272228 15 9605 XP_006716683 15 9605 XP_006716682 15 9605 NP_002277 15 9605>NP_722576 Length = 3080 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LNATVTRK 9 LNATVTRK Sbjct: 835 LNATVTRK 842>XP_005262424 Length = 2875 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LNATVTRK 9 LNATVTRK Sbjct: 630 LNATVTRK 637>NP_006527 Length = 943 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 ILNATVT 7 ILNATVT Sbjct: 635 ILNATVT 641>NP_660320 Length = 313 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NATVTRK 9 NAT TRK Sbjct: 100 NATATRK 106>NP_998818 Length = 426 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NATVTRK 9 NAT TRK Sbjct: 213 NATATRK 219>NP_001103132 Length = 4284 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ILNATVTR 8 +LNATV R Sbjct: 3858 VLNATVQR 3865>XP_005272989 Length = 426 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 NATVTRK 9 NAT TRK Sbjct: 213 NATATRK 219>NP_006176 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>NP_001273490 Length = 2101 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1800 IINITMTKK 1808>XP_006718633 Length = 2101 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1800 IINITMTKK 1808>XP_006718632 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718631 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718630 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718629 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718628 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718627 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718626 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>XP_006718625 Length = 2115 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I+N T+T+K Sbjct: 1814 IINITMTKK 1822>NP_055861 Length = 2677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LNATVTR 8 LN T+TR Sbjct: 2408 LNVTITR 2414>NP_003882 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 +LN TVT + Sbjct: 330 VLNVTVTTR 338>NP_001243063 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 +LN TVT + Sbjct: 352 VLNVTVTTR 360>NP_003288 Length = 603 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 ++NAT+T + Sbjct: 559 LMNATITEE 567>NP_003105 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 I+NA TRK Sbjct: 812 IINALSTRK 820>NP_757367 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 I+NA TRK Sbjct: 812 IINALSTRK 820>NP_112196 Length = 733 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I +AT+TR+ Sbjct: 188 ICSATITRR 196>NP_001189352 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 I +AT+TR+ Sbjct: 32 ICSATITRR 40>XP_006719648 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 ++NAT+T + Sbjct: 382 LMNATITEE 390>XP_006719647 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 ++NAT+T + Sbjct: 513 LMNATITEE 521>XP_005269190 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ILNATVTRK 9 ++NAT+T + Sbjct: 554 LMNATITEE 562>XP_005272230 Length = 2706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LNATVTR 8 LN T+TR Sbjct: 2408 LNVTITR 2414>XP_005272229 Length = 2706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LNATVTR 8 LN T+TR Sbjct: 2408 LNVTITR 2414>XP_005272228 Length = 2706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 LNATVTR 8 LN T+TR Sbjct: 2408 LNVTITR 2414>XP_006716683 Length = 884 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 I+NA TRK Sbjct: 770 IINALSTRK 778>XP_006716682 Length = 926 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ILNATVTRK 9 I+NA TRK Sbjct: 812 IINALSTRK 820>NP_002277 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LNATVT 7 LNATVT Sbjct: 342 LNATVT 347Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.127 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 295,986 Number of extensions: 357 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |