Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_570711 19 665 NP_570712 19 665 NP_570714 19 665 NP_570713 19 665 NP_570716 19 665 NP_000235 19 665 NP_570715 19 665 XP_006718620 19 665 XP_005274059 19 665 XP_005274060 19 665 XP_005274058 19 665 NP_599152 18 1935 NP_443166 18 1935 XP_006711207 18 1935 NP_056327 17 3301 XP_006713163 17 3301 NP_058644 17 4312 NP_001032358 17 4312 XP_006721257 17 4312 XP_006721256 17 4312 XP_005256034 17 4312 NP_597996 17 4312 NP_002147 15 9605 NP_955472 15 9605 XP_005246575 15 9605>NP_570711 Length = 610 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 152 LDSSGVAF 159>NP_570712 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>NP_570714 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>NP_570713 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>NP_570716 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>NP_000235 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>NP_570715 Length = 615 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 157 LDSSGVAF 164>XP_006718620 Length = 610 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 152 LDSSGVAF 159>XP_005274059 Length = 610 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 152 LDSSGVAF 159>XP_005274060 Length = 610 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 152 LDSSGVAF 159>XP_005274058 Length = 610 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LDSSGVAF 9 LDSSGVAF Sbjct: 152 LDSSGVAF 159>NP_599152 Length = 887 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ILDSSGVAF 9 ILD SGV+F Sbjct: 666 ILDMSGVSF 674>NP_443166 Length = 791 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ILDSSGVAF 9 ILD SGV+F Sbjct: 666 ILDMSGVSF 674>XP_006711207 Length = 791 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ILDSSGVAF 9 ILD SGV+F Sbjct: 666 ILDMSGVSF 674>NP_056327 Length = 4265 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ILDSSGVAF 9 +LDSSGV + Sbjct: 664 VLDSSGVHY 672>XP_006713163 Length = 4265 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ILDSSGVAF 9 +LDSSGV + Sbjct: 664 VLDSSGVHY 672>NP_058644 Length = 346 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DSSGVAF 9 DSSG+AF Sbjct: 99 DSSGLAF 105>NP_001032358 Length = 345 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DSSGVAF 9 DSSG+AF Sbjct: 98 DSSGLAF 104>XP_006721257 Length = 287 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DSSGVAF 9 DSSG+AF Sbjct: 40 DSSGLAF 46>XP_006721256 Length = 342 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DSSGVAF 9 DSSG+AF Sbjct: 95 DSSGLAF 101>XP_005256034 Length = 357 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DSSGVAF 9 DSSG+AF Sbjct: 110 DSSGLAF 116>NP_597996 Length = 563 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ILDSSGVAF 9 +LD SGV F Sbjct: 468 VLDFSGVTF 476>NP_002147 Length = 573 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ILDSSGVA 8 +LD++GVA Sbjct: 529 LLDAAGVA 536>NP_955472 Length = 573 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ILDSSGVA 8 +LD++GVA Sbjct: 529 LLDAAGVA 536>XP_005246575 Length = 573 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ILDSSGVA 8 +LD++GVA Sbjct: 529 LLDAAGVA 536Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.140 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 509,066 Number of extensions: 615 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |