Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_064450 18 1135 XP_005273257 18 1135 NP_001189394 16 5631 NP_001189393 16 5631 NP_006615 16 5631 NP_001189395 16 5631 NP_079350 16 5631 NP_001189396 16 5631 NP_997644 16 5631 NP_001189397 16 5631 XP_005252420 16 5631 XP_006717439 16 5631 XP_005252419 16 5631 XP_005252418 16 5631 XP_005252417 16 5631 XP_005252416 16 5631 XP_006714380 16 5631 XP_006714379 16 5631 XP_006714378 16 5631 XP_006714377 16 5631 NP_055177 16 7355 NP_932164 16 7355 NP_001268451 15 9605 NP_001268449 15 9605 NP_877954 15 9605 NP_001268450 15 9605 NP_115874 15 9605 NP_001269723 15 9605 NP_055705 15 9605 NP_001269722 15 9605 NP_001035924 15 9605 NP_878913 15 9605 NP_001013863 15 9605 NP_060190 15 9605 XP_005259649 15 9605 XP_006722854 15 9605 XP_006722853 15 9605 XP_006713549 15 9605>NP_064450 Length = 1722 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IKITTRQLS 9 IK TTRQLS Sbjct: 419 IKTTTRQLS 427>XP_005273257 Length = 1726 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IKITTRQLS 9 IK TTRQLS Sbjct: 419 IKTTTRQLS 427>NP_001189394 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_001189393 Length = 548 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_006615 Length = 602 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_001189395 Length = 547 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_079350 Length = 4012 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 KITT QLS Sbjct: 2217 KITTLQLS 2224>NP_001189396 Length = 514 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_997644 Length = 567 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>NP_001189397 Length = 568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_005252420 Length = 547 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_006717439 Length = 548 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_005252419 Length = 548 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_005252418 Length = 548 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_005252417 Length = 601 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_005252416 Length = 602 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 K TTRQLS Sbjct: 50 KETTRQLS 57>XP_006714380 Length = 3897 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 KITT QLS Sbjct: 2102 KITTLQLS 2109>XP_006714379 Length = 3936 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 KITT QLS Sbjct: 2217 KITTLQLS 2224>XP_006714378 Length = 3965 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 KITT QLS Sbjct: 2170 KITTLQLS 2177>XP_006714377 Length = 4010 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KITTRQLS 9 KITT QLS Sbjct: 2215 KITTLQLS 2222>NP_055177 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 +KIT RQL Sbjct: 307 LKITLRQL 314>NP_932164 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 +KIT RQL Sbjct: 307 LKITLRQL 314>NP_001268451 Length = 793 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ITTRQL 8 ITTRQL Sbjct: 661 ITTRQL 666>NP_001268449 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ITTRQL 8 ITTRQL Sbjct: 708 ITTRQL 713>NP_877954 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ITTRQL 8 ITTRQL Sbjct: 692 ITTRQL 697>NP_001268450 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ITTRQL 8 ITTRQL Sbjct: 748 ITTRQL 753>NP_115874 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 ITTRQL 8 ITTRQL Sbjct: 708 ITTRQL 713>NP_001269723 Length = 895 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 212 RMTTKQLS 219>NP_055705 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 212 RMTTKQLS 219>NP_001269722 Length = 711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 28 RMTTKQLS 35>NP_001035924 Length = 1133 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 452 RMTTKQLS 459>NP_878913 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 452 RMTTKQLS 459>NP_001013863 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 + +TTRQ+ Sbjct: 187 VSVTTRQM 194>NP_060190 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 + +TTRQ+ Sbjct: 187 VSVTTRQM 194>XP_005259649 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 + +TTRQ+ Sbjct: 264 VSVTTRQM 271>XP_006722854 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 + +TTRQ+ Sbjct: 264 VSVTTRQM 271>XP_006722853 Length = 526 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IKITTRQL 8 + +TTRQ+ Sbjct: 264 VSVTTRQM 271>XP_006713549 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KITTRQLS 9 ++TT+QLS Sbjct: 212 RMTTKQLS 219Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.129 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 301,650 Number of extensions: 253 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |