Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 2528 XP_006716142 17 2528 XP_005250088 17 2528 XP_006716141 17 2528 XP_005250085 17 2528 XP_006716140 17 2528 XP_005250084 17 2528 XP_005250083 17 2528 XP_005250082 17 2528 XP_005263028 16 5631 NP_003855 16 5631 NP_001156372 16 7355 NP_001273330 16 7355 NP_001124535 16 7355 NP_001124534 16 7355 NP_078908 16 7355 NP_660359 16 7355 NP_001273387 15 9605 NP_003461 15 9605 NP_001273386 15 9605>NP_733751 Length = 4911 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4869 IISSSRRIQ 4877>XP_006716142 Length = 4927 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4885 IISSSRRIQ 4893>XP_005250088 Length = 4928 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4886 IISSSRRIQ 4894>XP_006716141 Length = 4959 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4917 IISSSRRIQ 4925>XP_005250085 Length = 4979 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4937 IISSSRRIQ 4945>XP_006716140 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4940 IISSSRRIQ 4948>XP_005250084 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4940 IISSSRRIQ 4948>XP_005250083 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4940 IISSSRRIQ 4948>XP_005250082 Length = 4983 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IISFSRRIQ 9 IIS SRRIQ Sbjct: 4941 IISSSRRIQ 4949>XP_005263028 Length = 152 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 IISFSRR 7 +ISFSRR Sbjct: 129 LISFSRR 135>NP_003855 Length = 220 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SFSRRIQ 9 SFS+RIQ Sbjct: 84 SFSKRIQ 90>NP_001156372 Length = 202 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IISFSRRI 8 IIS+ RRI Sbjct: 162 IISYKRRI 169>NP_001273330 Length = 211 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IISFSRRI 8 IIS+ RRI Sbjct: 162 IISYKRRI 169>NP_001124535 Length = 137 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SFSRRIQ 9 SFS+R+Q Sbjct: 46 SFSKRVQ 52>NP_001124534 Length = 142 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SFSRRIQ 9 SFS+R+Q Sbjct: 46 SFSKRVQ 52>NP_078908 Length = 183 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SFSRRIQ 9 SFS+R+Q Sbjct: 46 SFSKRVQ 52>NP_660359 Length = 229 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IISFSRRI 8 IIS+ RRI Sbjct: 162 IISYKRRI 169>NP_001273387 Length = 1003 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SFSRRI 8 SFSRRI Sbjct: 50 SFSRRI 55>NP_003461 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SFSRRI 8 SFSRRI Sbjct: 149 SFSRRI 154>NP_001273386 Length = 1086 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SFSRRI 8 SFSRRI Sbjct: 133 SFSRRI 138Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.347 0.151 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 383,319 Number of extensions: 332 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |