Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005219 19 665 NP_056081 16 5631 NP_001247420 16 5631 XP_006723819 16 5631 NP_001026 15 9605 NP_001276866 15 9605 NP_004439 15 9605 NP_001276865 15 9605 NP_001005862 15 9605 NP_001230925 15 9605 NP_001265524 15 9605 NP_877577 15 9605 NP_005907 15 9605 NP_001027 15 9605 NP_689841 15 9605 XP_005257197 15 9605 XP_006721828 15 9605 XP_006716579 15 9605 XP_005250871 15 9605 XP_006716578 15 9605 XP_005250870 15 9605 XP_006716577 15 9605 XP_005250869 15 9605 XP_005250868 15 9605 XP_005250405 15 9605 XP_006711873 15 9605 XP_006711872 15 9605 XP_006711871 15 9605 XP_006711870 15 9605 XP_006711869 15 9605 XP_006711868 15 9605 XP_006711867 15 9605 XP_006711866 15 9605 XP_006711865 15 9605>NP_005219 Length = 1210 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IIEFSKMAQ 9 IIEFSKMA+ Sbjct: 965 IIEFSKMAR 973>NP_056081 Length = 581 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IIEFSKMA 8 IIEF K+A Sbjct: 106 IIEFKKLA 113>NP_001247420 Length = 597 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IIEFSKMA 8 IIEF K+A Sbjct: 106 IIEFKKLA 113>XP_006723819 Length = 614 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IIEFSKMA 8 IIEF K+A Sbjct: 106 IIEFKKLA 113>NP_001026 Length = 4967 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>NP_001276866 Length = 1055 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 973 VSEFSRMAR 981>NP_004439 Length = 1255 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 973 VSEFSRMAR 981>NP_001276865 Length = 1240 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 958 VSEFSRMAR 966>NP_001005862 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 943 VSEFSRMAR 951>NP_001230925 Length = 4865 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 905 LVEFSKLPE 913>NP_001265524 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IIEFSKMAQ 9 I EF KMA+ Sbjct: 268 IDEFDKMAE 276>NP_877577 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IIEFSKMAQ 9 I EF KMA+ Sbjct: 268 IDEFDKMAE 276>NP_005907 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IIEFSKMAQ 9 I EF KMA+ Sbjct: 444 IDEFDKMAE 452>NP_001027 Length = 4870 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 905 LVEFSKLPE 913>NP_689841 Length = 440 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_005257197 Length = 1225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 943 VSEFSRMAR 951>XP_006721828 Length = 1336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 + EFS+MA+ Sbjct: 1054 VSEFSRMAR 1062>XP_006716579 Length = 353 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 12 VEFLKLAQ 19>XP_005250871 Length = 357 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_006716578 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_005250870 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_006716577 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_005250869 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_005250868 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 IEFSKMAQ 9 +EF K+AQ Sbjct: 99 VEFLKLAQ 106>XP_005250405 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IIEFSKMAQ 9 I EF KMA+ Sbjct: 337 IDEFDKMAE 345>XP_006711873 Length = 4954 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711872 Length = 2735 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711871 Length = 4906 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711870 Length = 4965 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711869 Length = 4973 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711868 Length = 4975 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711867 Length = 4977 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711866 Length = 4984 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926>XP_006711865 Length = 4985 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IIEFSKMAQ 9 ++EFSK+ + Sbjct: 918 LVEFSKLPE 926Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.134 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 349,964 Number of extensions: 454 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |