Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1135 NP_001075109 18 1135 NP_443728 15 9605 NP_722541 15 9605 NP_001092140 15 9605 NP_001092141 15 9605 XP_006718478 15 9605 XP_006718477 15 9605 XP_006718476 15 9605 XP_006718475 15 9605 XP_005273764 15 9605 XP_006718474 15 9605 XP_006713550 15 9605>NP_008835 Length = 4128 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 IIAKQLFS 8 IIAKQLFS Sbjct: 2803 IIAKQLFS 2810>NP_001075109 Length = 4097 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 IIAKQLFS 8 IIAKQLFS Sbjct: 2803 IIAKQLFS 2810>NP_443728 Length = 2145 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIAKQLFSI 9 +IA+Q FS+ Sbjct: 1091 LIARQCFSL 1099>NP_722541 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 335 KQLFSI 340>NP_001092140 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 335 KQLFSI 340>NP_001092141 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 335 KQLFSI 340>XP_006718478 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 190 KQLFSI 195>XP_006718477 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 190 KQLFSI 195>XP_006718476 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 335 KQLFSI 340>XP_006718475 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 335 KQLFSI 340>XP_005273764 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 394 KQLFSI 399>XP_006718474 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 KQLFSI 9 KQLFSI Sbjct: 623 KQLFSI 628>XP_006713550 Length = 2180 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IIAKQLFSI 9 +IA+Q FS+ Sbjct: 1126 LIARQCFSL 1134Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.152 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 325,074 Number of extensions: 321 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |