Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 20 509 NP_055903 20 509 NP_057710 17 2528 NP_115622 17 3301 NP_689606 17 4312 NP_001034859 17 4312 NP_001167589 17 4312 NP_976049 17 4312 XP_005264923 17 4312 NP_000246 16 5631 XP_005249200 16 5631 NP_001245298 16 7355 NP_001245297 16 7355 NP_001035982 16 7355 NP_001245295 16 7355 NP_001245296 16 7355 NP_005089 16 7355 XP_006719939 16 7355 XP_005273709 16 7355 NP_112194 16 7355 NP_001161147 15 9605 NP_002843 15 9605 NP_003460 15 9605 NP_001161146 15 9605 NP_694854 15 9605 NP_001438 15 9605 NP_001243431 15 9605 NP_001243432 15 9605 NP_001243433 15 9605 NP_001243434 15 9605 NP_001087194 15 9605 NP_001273654 15 9605 NP_065917 15 9605 XP_006714824 15 9605 XP_006713145 15 9605 XP_006713144 15 9605>NP_001155973 Length = 1833 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 FVVSGREQ 9 FVVSGREQ Sbjct: 357 FVVSGREQ 364>NP_055903 Length = 1723 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 FVVSGREQ 9 FVVSGREQ Sbjct: 357 FVVSGREQ 364>NP_057710 Length = 659 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IFVVSGREQ 9 IFVV+GR++ Sbjct: 276 IFVVTGRKE 284>NP_115622 Length = 569 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFVVSGREQ 9 +FVV+GR++ Sbjct: 110 VFVVTGRKE 118>NP_689606 Length = 621 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IFVVSGRE 8 I+VV GRE Sbjct: 414 IYVVGGRE 421>NP_001034859 Length = 453 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IFVVSGREQ 9 +F++SG EQ Sbjct: 132 LFILSGMEQ 140>NP_001167589 Length = 666 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IFVVSGREQ 9 +F+V+GR++ Sbjct: 223 VFIVTGRKE 231>NP_976049 Length = 651 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 IFVVSGREQ 9 +F+V+GR++ Sbjct: 223 VFIVTGRKE 231>XP_005264923 Length = 585 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IFVVSGRE 8 I+VV GRE Sbjct: 414 IYVVGGRE 421>NP_000246 Length = 750 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 F+V+G EQ Sbjct: 199 FIVTGEEQ 206>XP_005249200 Length = 750 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 F+V+G EQ Sbjct: 199 FIVTGEEQ 206>NP_001245298 Length = 1112 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 956 FVISAKEQ 963>NP_001245297 Length = 1123 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 886 FVISAKEQ 893>NP_001035982 Length = 1193 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 956 FVISAKEQ 963>NP_001245295 Length = 1182 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 945 FVISAKEQ 952>NP_001245296 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 910 FVISAKEQ 917>NP_005089 Length = 206 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 FVVSGR 7 FVVSGR Sbjct: 182 FVVSGR 187>XP_006719939 Length = 930 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 693 FVISAKEQ 700>XP_005273709 Length = 258 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IFVVSGREQ 9 + ++SGR+Q Sbjct: 222 LLIISGRKQ 230>NP_112194 Length = 849 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 FVVSGREQ 9 FV+S +EQ Sbjct: 693 FVISAKEQ 700>NP_001161147 Length = 404 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 284 VVSGRE 289>NP_002843 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 IFVVSGRE 8 +FVV G E Sbjct: 246 VFVVGGEE 253>NP_003460 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IFVVSGRE 8 IF++SG E Sbjct: 19 IFLISGAE 26>NP_001161146 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 275 VVSGRE 280>NP_694854 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 277 VVSGRE 282>NP_001438 Length = 4349 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VVSGREQ 9 VVSG EQ Sbjct: 3255 VVSGNEQ 3261>NP_001243431 Length = 327 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 167 VVSGRE 172>NP_001243432 Length = 327 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 167 VVSGRE 172>NP_001243433 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 167 VVSGRE 172>NP_001243434 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 167 VVSGRE 172>NP_001087194 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IFVVSGREQ 9 +F+V+GR + Sbjct: 176 VFMVTGRRE 184>NP_001273654 Length = 687 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IFVVSGRE 8 +FV+ GR+ Sbjct: 447 LFVIGGRD 454>NP_065917 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IFVVSGRE 8 +FV+ GR+ Sbjct: 508 LFVIGGRD 515>XP_006714824 Length = 4349 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VVSGREQ 9 VVSG EQ Sbjct: 3255 VVSGNEQ 3261>XP_006713145 Length = 395 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 275 VVSGRE 280>XP_006713144 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VVSGRE 8 VVSGRE Sbjct: 275 VVSGRE 280Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.145 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 553,321 Number of extensions: 780 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |