Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_001268421 17 2528 NP_000170 17 2528 NP_001268422 17 2528 NP_001268423 17 2528 XP_005264328 17 2528 NP_004760 17 4312 NP_064717 17 4312 NP_064718 17 4312 NP_001275896 15 9605 NP_001275895 15 9605 NP_001275894 15 9605 NP_077817 15 9605 NP_001275893 15 9605 XP_005247869 15 9605 XP_006713830 15 9605 XP_005247867 15 9605 XP_005247866 15 9605 XP_005247863 15 9605 XP_005247862 15 9605 XP_005247861 15 9605 XP_005247860 15 9605 XP_005247859 15 9605 NP_004585 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 IFTRMGAA+ Sbjct: 935 IFTRMGAAD 943>NP_001268421 Length = 1230 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 +FTR+GA++ Sbjct: 1043 VFTRLGASD 1051>NP_000170 Length = 1360 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 +FTR+GA++ Sbjct: 1173 VFTRLGASD 1181>NP_001268422 Length = 1058 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 +FTR+GA++ Sbjct: 871 VFTRLGASD 879>NP_001268423 Length = 1058 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 +FTR+GA++ Sbjct: 871 VFTRLGASD 879>XP_005264328 Length = 1261 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IFTRMGAAN 9 +FTR+GA++ Sbjct: 1074 VFTRLGASD 1082>NP_004760 Length = 531 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IFTRMG 6 IFTRMG Sbjct: 179 IFTRMG 184>NP_064717 Length = 549 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IFTRMG 6 IFTRMG Sbjct: 179 IFTRMG 184>NP_064718 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IFTRMG 6 IFTRMG Sbjct: 179 IFTRMG 184>NP_001275896 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 340 VYTRLGEMN 348>NP_001275895 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>NP_001275894 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 472 VYTRLGEMN 480>NP_077817 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>NP_001275893 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 474 VYTRLGEMN 482>XP_005247869 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 233 VYTRLGEMN 241>XP_006713830 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 316 VYTRLGEMN 324>XP_005247867 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 340 VYTRLGEMN 348>XP_005247866 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>XP_005247863 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>XP_005247862 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>XP_005247861 Length = 612 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 472 VYTRLGEMN 480>XP_005247860 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>XP_005247859 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IFTRMGAAN 9 ++TR+G N Sbjct: 492 VYTRLGEMN 500>NP_004585 Length = 896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 FTRMGAAN 9 F MG+AN Sbjct: 227 FVEMGSAN 234Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 306,042 Number of extensions: 311 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |