Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_060719 17 2528 NP_001258968 17 2528 NP_001011649 17 2528 NP_001185761 17 2528 NP_071754 17 2528 NP_001185763 17 2528 NP_001002810 17 2528 NP_055459 17 2528 NP_001182189 17 2528 NP_001002812 17 2528 NP_001182190 17 2528 XP_006717248 17 2528 XP_006717247 17 2528 XP_006717246 17 2528 XP_006717245 17 2528 XP_006717244 17 2528 XP_006717243 17 2528 XP_006717242 17 2528 XP_006711719 17 2528 XP_006711717 17 2528 XP_006711716 17 2528 XP_006711715 17 2528 XP_006711714 17 2528 XP_006711713 17 2528 XP_006711710 17 2528 XP_006711709 17 2528 NP_056110 16 7355 NP_004059 16 7355 NP_001020376 16 7355 XP_005258159 16 7355 XP_006722384 16 7355 NP_597707 15 9605 NP_001229858 15 9605 XP_005255178 15 9605 XP_005255176 15 9605>NP_060719 Length = 1893 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>NP_001258968 Length = 1663 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>NP_001011649 Length = 1814 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>NP_001185761 Length = 2240 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>NP_071754 Length = 310 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 186 IELKVEVES 194>NP_001185763 Length = 2362 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>NP_001002810 Length = 173 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>NP_055459 Length = 2346 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>NP_001182189 Length = 141 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 17 IELKVEVES 25>NP_001002812 Length = 969 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>NP_001182190 Length = 176 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 52 IELKVEVES 60>XP_006717248 Length = 1664 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>XP_006717247 Length = 1670 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>XP_006717246 Length = 1820 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>XP_006717245 Length = 1861 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>XP_006717244 Length = 1867 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 104 IELKVEVES 112>XP_006717243 Length = 1889 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 94 IELKVEVES 102>XP_006717242 Length = 1898 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 103 IELKVEVES 111>XP_006711719 Length = 2302 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>XP_006711717 Length = 2385 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>XP_006711716 Length = 2411 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>XP_006711715 Length = 2428 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>XP_006711714 Length = 2429 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 49 IELKVEVES 57>XP_006711713 Length = 2432 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 52 IELKVEVES 60>XP_006711710 Length = 2494 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>XP_006711709 Length = 2495 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 IELKV VES Sbjct: 115 IELKVEVES 123>NP_056110 Length = 2005 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 +ELKV++ S Sbjct: 746 VELKVILHS 754>NP_004059 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IELKVVVES 9 +E+KVV++S Sbjct: 301 LEVKVVIKS 309>NP_001020376 Length = 433 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IELKVVVES 9 +E+KVV++S Sbjct: 299 LEVKVVIKS 307>XP_005258159 Length = 1817 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 +ELKV++ S Sbjct: 558 VELKVILHS 566>XP_006722384 Length = 1877 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IELKVVVES 9 +ELKV++ S Sbjct: 618 VELKVILHS 626>NP_597707 Length = 656 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ELKVVVES 9 EL+ VVES Sbjct: 534 ELRAVVES 541>NP_001229858 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ELKVVVES 9 EL+ VVES Sbjct: 427 ELRAVVES 434>XP_005255178 Length = 450 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ELKVVVES 9 EL+ VVES Sbjct: 328 ELRAVVES 335>XP_005255176 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ELKVVVES 9 EL+ VVES Sbjct: 405 ELRAVVES 412Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.133 0.291 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 308,687 Number of extensions: 479 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |