Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 18 1935 XP_005248577 18 1935 XP_005248576 18 1935 NP_000248 17 2528 XP_005267754 17 2528 XP_005267753 17 2528 NP_001274675 16 5631 NP_001035865 16 5631 NP_061909 16 5631 NP_001274670 16 5631 NP_001073283 16 7355 NP_694567 16 7355 XP_005253356 16 7355 XP_006719092 16 7355 NP_079023 15 9605 NP_001128715 15 9605 NP_001128717 15 9605 NP_001128716 15 9605 NP_001008657 15 9605 NP_000347 15 9605 NP_001182070 15 9605 NP_055469 15 9605 NP_000704 15 9605 NP_003326 15 9605 XP_005268566 15 9605 XP_005268565 15 9605 XP_005268564 15 9605 XP_005268563 15 9605 XP_005268562 15 9605 XP_005268561 15 9605 XP_005268560 15 9605 XP_005268559 15 9605 XP_005265487 15 9605 XP_006713384 15 9605>NP_005912 Length = 1512 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAVFGAAAR 9 IA FGAAAR Sbjct: 1386 IADFGAAAR 1394>XP_005248577 Length = 1349 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAVFGAAAR 9 IA FGAAAR Sbjct: 1223 IADFGAAAR 1231>XP_005248576 Length = 1375 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAVFGAAAR 9 IA FGAAAR Sbjct: 1249 IADFGAAAR 1257>NP_000248 Length = 1935 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 +AVFGAAA Sbjct: 6 MAVFGAAA 13>XP_005267754 Length = 1087 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 +AVFGAAA Sbjct: 6 MAVFGAAA 13>XP_005267753 Length = 1935 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 +AVFGAAA Sbjct: 6 MAVFGAAA 13>NP_001274675 Length = 241 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 I+VFGAA+ Sbjct: 40 ISVFGAAS 47>NP_001035865 Length = 340 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 I+VFGAA+ Sbjct: 139 ISVFGAAS 146>NP_061909 Length = 370 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 I+VFGAA+ Sbjct: 169 ISVFGAAS 176>NP_001274670 Length = 308 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 IAVFGAAA 8 I+VFGAA+ Sbjct: 107 ISVFGAAS 114>NP_001073283 Length = 183 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVFGAAAR 9 +VFG AAR Sbjct: 106 SVFGPAAR 113>NP_694567 Length = 163 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVFGAAAR 9 +VFG AAR Sbjct: 86 SVFGPAAR 93>XP_005253356 Length = 170 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVFGAAAR 9 +VFG AAR Sbjct: 93 SVFGPAAR 100>XP_006719092 Length = 183 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVFGAAAR 9 +VFG AAR Sbjct: 106 SVFGPAAR 113>NP_079023 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 ++ FG AAR Sbjct: 13 LSAFGGAAR 21>NP_001128715 Length = 1488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_001128717 Length = 1412 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_001128716 Length = 1451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_001008657 Length = 958 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_000347 Length = 1411 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_001182070 Length = 1450 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>NP_055469 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IAVFGAAAR 9 +AV GAAA+ Sbjct: 334 VAVGGAAAK 342>NP_000704 Length = 206 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 IA+FGA + Sbjct: 6 IAIFGATGQ 14>NP_003326 Length = 1012 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IAVFGA 6 IAVFGA Sbjct: 419 IAVFGA 424>XP_005268566 Length = 994 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268565 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268564 Length = 1449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268563 Length = 1488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268562 Length = 1489 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268561 Length = 1525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268560 Length = 1525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005268559 Length = 1526 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IAVFGAAAR 9 + FGAAA+ Sbjct: 179 VPAFGAAAK 187>XP_005265487 Length = 987 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IAVFGA 6 IAVFGA Sbjct: 419 IAVFGA 424>XP_006713384 Length = 1005 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 IAVFGA 6 IAVFGA Sbjct: 419 IAVFGA 424Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.140 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 313,582 Number of extensions: 195 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |