Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 390 NP_000170 20 390 NP_001268422 20 390 NP_001268423 20 390 XP_005264328 20 390 NP_002449 16 5631 NP_008915 16 5631 NP_005594 16 7355 NP_001018066 16 7355 NP_003374 16 7355 XP_006722545 16 7355 XP_006722544 16 7355 XP_006716928 16 7355 XP_006716927 16 7355 NP_001007256 16 7355 NP_001185480 15 9605 NP_077742 15 9605 NP_077744 15 9605 NP_001185481 15 9605 NP_000369 15 9605 NP_001177874 15 9605 NP_733828 15 9605 NP_001177876 15 9605 NP_005649 15 9605 NP_062547 15 9605 NP_851782 15 9605 XP_006720918 15 9605 XP_005262782 15 9605 XP_006714141 15 9605 XP_005262780 15 9605 XP_005262779 15 9605 NP_001397 15 9605>NP_001268421 Length = 1230 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ATFDGTAI 9 ATFDGTAI Sbjct: 1090 ATFDGTAI 1097>NP_000170 Length = 1360 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ATFDGTAI 9 ATFDGTAI Sbjct: 1220 ATFDGTAI 1227>NP_001268422 Length = 1058 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ATFDGTAI 9 ATFDGTAI Sbjct: 918 ATFDGTAI 925>NP_001268423 Length = 1058 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ATFDGTAI 9 ATFDGTAI Sbjct: 918 ATFDGTAI 925>XP_005264328 Length = 1261 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ATFDGTAI 9 ATFDGTAI Sbjct: 1121 ATFDGTAI 1128>NP_002449 Length = 5762 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ATFDGTA 8 +TFDGT+ Sbjct: 5084 STFDGTS 5090>NP_008915 Length = 228 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 IATFDGTAI 9 ++T DGT I Sbjct: 32 VSTIDGTVI 40>NP_005594 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 IATFDG 6 +ATFDG Sbjct: 256 LATFDG 261>NP_001018066 Length = 845 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 IATFDGT 7 +AT DGT Sbjct: 539 VATLDGT 545>NP_003374 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 IATFDGT 7 +AT DGT Sbjct: 539 VATLDGT 545>XP_006722545 Length = 982 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 IATFDG 6 +ATFDG Sbjct: 256 LATFDG 261>XP_006722544 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 IATFDG 6 +ATFDG Sbjct: 256 LATFDG 261>XP_006716928 Length = 850 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 IATFDGT 7 +AT DGT Sbjct: 544 VATLDGT 550>XP_006716927 Length = 878 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 IATFDGT 7 +AT DGT Sbjct: 544 VATLDGT 550>NP_001007256 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ATFDGTA 8 ++FDGTA Sbjct: 242 SSFDGTA 248>NP_001185480 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 9 TFDGT 13>NP_077742 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 221 TFDGT 225>NP_077744 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 221 TFDGT 225>NP_001185481 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 9 TFDGT 13>NP_000369 Length = 497 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 221 TFDGT 225>NP_001177874 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 263 ASFDGT 268>NP_733828 Length = 1322 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 412 ASFDGT 417>NP_001177876 Length = 294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 141 ASFDGT 146>NP_005649 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 263 ASFDGT 268>NP_062547 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 3 TFDGT 7 TFDGT Sbjct: 457 TFDGT 461>NP_851782 Length = 1283 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 388 ASFDGT 393>XP_006720918 Length = 175 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IATFDGTAI 9 ++ +DGTAI Sbjct: 103 VSHWDGTAI 111>XP_005262782 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 314 ASFDGT 319>XP_006714141 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 412 ASFDGT 417>XP_005262780 Length = 1307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 412 ASFDGT 417>XP_005262779 Length = 1314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 ATFDGT 7 A+FDGT Sbjct: 412 ASFDGT 417>NP_001397 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 IATFDGT 7 IAT DGT Sbjct: 138 IATSDGT 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 600,245 Number of extensions: 830 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |