Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 869 NP_001075109 19 869 NP_597677 17 3301 NP_056199 17 3301 XP_005248339 17 3301 XP_005248337 17 3301 XP_006714531 17 3301 XP_006714530 17 3301 NP_937762 16 5631 NP_115599 16 5631 NP_001121189 16 5631 XP_006718613 16 5631 XP_006718612 16 5631 XP_005274044 16 5631 XP_005274045 16 5631 XP_005248180 16 5631 XP_006714090 16 5631 NP_003206 16 5631 NP_055826 15 9605 NP_001185879 15 9605 NP_062541 15 9605 NP_671494 15 9605 NP_006268 15 9605>NP_008835 Length = 4128 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IAMYDIIAA 9 IAM+DIIAA Sbjct: 1301 IAMHDIIAA 1309>NP_001075109 Length = 4097 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IAMYDIIAA 9 IAM+DIIAA Sbjct: 1301 IAMHDIIAA 1309>NP_597677 Length = 2804 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 343 AMYDIISS 350>NP_056199 Length = 2697 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_005248339 Length = 2584 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 123 AMYDIISS 130>XP_005248337 Length = 2698 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_006714531 Length = 2738 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 343 AMYDIISS 350>XP_006714530 Length = 2755 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AMYDIIAA 9 AMYDII++ Sbjct: 343 AMYDIISS 350>NP_937762 Length = 3333 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 IAMYDIIA 8 IAMY+++A Sbjct: 1009 IAMYELLA 1016>NP_115599 Length = 2034 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMYDIIAA 9 A+YD IAA Sbjct: 1665 ALYDAIAA 1672>NP_001121189 Length = 3277 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 IAMYDIIA 8 IAMY+++A Sbjct: 1009 IAMYELLA 1016>XP_006718613 Length = 1946 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMYDIIAA 9 A+YD IAA Sbjct: 1577 ALYDAIAA 1584>XP_006718612 Length = 2041 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMYDIIAA 9 A+YD IAA Sbjct: 1672 ALYDAIAA 1679>XP_005274044 Length = 2046 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMYDIIAA 9 A+YD IAA Sbjct: 1677 ALYDAIAA 1684>XP_005274045 Length = 2047 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AMYDIIAA 9 A+YD IAA Sbjct: 1678 ALYDAIAA 1685>XP_005248180 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAMYDIIAA 9 +AMYD AA Sbjct: 105 VAMYDFQAA 113>XP_006714090 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAMYDIIAA 9 +AMYD AA Sbjct: 105 VAMYDFQAA 113>NP_003206 Length = 631 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAMYDIIAA 9 +AMYD AA Sbjct: 185 VAMYDFQAA 193>NP_055826 Length = 1858 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MYDIIAA 9 MYD++ A Sbjct: 912 MYDVVGA 918>NP_001185879 Length = 1880 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MYDIIAA 9 MYD++ A Sbjct: 934 MYDVVGA 940>NP_062541 Length = 1670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 IAMYDIIA 8 IAMYD A Sbjct: 1106 IAMYDYAA 1113>NP_671494 Length = 1249 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 IAMYDIIA 8 IAMYD A Sbjct: 1133 IAMYDYAA 1140>NP_006268 Length = 1697 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 IAMYDIIA 8 IAMYD A Sbjct: 1133 IAMYDYAA 1140Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.145 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 347,546 Number of extensions: 278 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |