Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1935 NP_001075109 18 1935 NP_722541 17 3301 NP_001092140 17 3301 NP_001092141 17 3301 XP_006718478 17 3301 XP_006718477 17 3301 XP_006718476 17 3301 XP_006718475 17 3301 XP_005273764 17 3301 XP_006718474 17 3301 NP_064541 16 7355 XP_006715822 16 7355 XP_005249870 16 7355 XP_005249869 16 7355 NP_001026 15 9605 XP_006711873 15 9605 XP_006711871 15 9605 XP_006711870 15 9605 XP_006711869 15 9605 XP_006711868 15 9605 XP_006711867 15 9605 XP_006711866 15 9605 XP_006711865 15 9605>NP_008835 Length = 4128 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 IAKQLFS L Sbjct: 2804 IAKQLFSSL 2812>NP_001075109 Length = 4097 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 IAKQLFS L Sbjct: 2804 IAKQLFSSL 2812>NP_722541 Length = 609 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 335 KQLFSIL 341>NP_001092140 Length = 609 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 335 KQLFSIL 341>NP_001092141 Length = 609 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 335 KQLFSIL 341>XP_006718478 Length = 464 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 190 KQLFSIL 196>XP_006718477 Length = 464 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 190 KQLFSIL 196>XP_006718476 Length = 609 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 335 KQLFSIL 341>XP_006718475 Length = 609 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 335 KQLFSIL 341>XP_005273764 Length = 668 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 394 KQLFSIL 400>XP_006718474 Length = 897 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KQLFSIL 9 KQLFSIL Sbjct: 623 KQLFSIL 629>NP_064541 Length = 363 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAKQLFSIL 9 + QLFSIL Sbjct: 22 LCSQLFSIL 30>XP_006715822 Length = 363 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAKQLFSIL 9 + QLFSIL Sbjct: 22 LCSQLFSIL 30>XP_005249870 Length = 363 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAKQLFSIL 9 + QLFSIL Sbjct: 22 LCSQLFSIL 30>XP_005249869 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAKQLFSIL 9 + QLFSIL Sbjct: 30 LCSQLFSIL 38>NP_001026 Length = 4967 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3912 VAKQVFNTL 3920>XP_006711873 Length = 4954 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3899 VAKQVFNTL 3907>XP_006711871 Length = 4906 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3851 VAKQVFNTL 3859>XP_006711870 Length = 4965 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3910 VAKQVFNTL 3918>XP_006711869 Length = 4973 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3918 VAKQVFNTL 3926>XP_006711868 Length = 4975 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3920 VAKQVFNTL 3928>XP_006711867 Length = 4977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3922 VAKQVFNTL 3930>XP_006711866 Length = 4984 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3929 VAKQVFNTL 3937>XP_006711865 Length = 4985 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IAKQLFSIL 9 +AKQ+F+ L Sbjct: 3930 VAKQVFNTL 3938Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.150 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 343,444 Number of extensions: 357 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |