Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 18 1135 NP_066124 18 1135 XP_006717999 18 1135 NP_003046 17 4312 XP_005273301 16 7355 NP_003263 16 7355 NP_077013 15 9605 NP_001257822 15 9605 NP_001257821 15 9605 NP_001257820 15 9605>NP_065681 Length = 1072 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAATVLFSF 9 IAA VLFSF Sbjct: 638 IAAAVLFSF 646>NP_066124 Length = 1114 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAATVLFSF 9 IAA VLFSF Sbjct: 638 IAAAVLFSF 646>XP_006717999 Length = 1207 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IAATVLFSF 9 IAA VLFSF Sbjct: 731 IAAAVLFSF 739>NP_003046 Length = 532 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AATVLFSF 9 A+TVLF+F Sbjct: 164 ASTVLFAF 171>XP_005273301 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TVLFSF 9 TVLFSF Sbjct: 93 TVLFSF 98>NP_003263 Length = 399 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 TVLFSF 9 TVLFSF Sbjct: 93 TVLFSF 98>NP_077013 Length = 173 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAATVLFSF 9 +A TVLF F Sbjct: 1 MADTVLFEF 9>NP_001257822 Length = 113 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAATVLFSF 9 +A TVLF F Sbjct: 1 MADTVLFEF 9>NP_001257821 Length = 127 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAATVLFSF 9 +A TVLF F Sbjct: 1 MADTVLFEF 9>NP_001257820 Length = 159 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IAATVLFSF 9 +A TVLF F Sbjct: 1 MADTVLFEF 9Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.145 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 276,867 Number of extensions: 295 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |