Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1135 NP_444254 18 1135 NP_444253 18 1135 NP_444255 18 1135 XP_005247551 18 1135 XP_005247550 18 1135 XP_006713712 18 1135 XP_005247549 18 1135 NP_001165405 15 9605 NP_001165404 15 9605 NP_071407 15 9605 NP_001185771 15 9605 XP_006726484 15 9605 XP_005266585 15 9605 XP_006718005 15 9605 XP_006718004 15 9605 XP_006718003 15 9605 XP_006715006 15 9605 XP_005275746 15 9605 XP_003403671 15 9605 XP_006710003 15 9605 XP_006710234 15 9605 NP_006422 15 9605>NP_444256 Length = 1794 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 394 VVSKAANR 401>NP_444254 Length = 1845 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 394 VVSKAANR 401>NP_444253 Length = 1914 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 394 VVSKAANR 401>NP_444255 Length = 1863 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 394 VVSKAANR 401>XP_005247551 Length = 1855 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 404 VVSKAANR 411>XP_005247550 Length = 1856 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 404 VVSKAANR 411>XP_006713712 Length = 1923 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 404 VVSKAANR 411>XP_005247549 Length = 1924 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VVSKAANR 9 VVSKAANR Sbjct: 404 VVSKAANR 411>NP_001165405 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 772 HVVNRDTNR 780>NP_001165404 Length = 1114 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 772 HVVNRDTNR 780>NP_071407 Length = 3354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3012 HVVNRDTNR 3020>NP_001185771 Length = 488 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 H V++ ANR Sbjct: 372 HAVTQLANR 380>XP_006726484 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 HVVSKA 6 H+VSKA Sbjct: 64 HIVSKA 69>XP_005266585 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HVVSKAAN 8 H+V KAA+ Sbjct: 208 HIVCKAAS 215>XP_006718005 Length = 3397 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3055 HVVNRDTNR 3063>XP_006718004 Length = 3399 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3057 HVVNRDTNR 3065>XP_006718003 Length = 3419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3077 HVVNRDTNR 3085>XP_006715006 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 HVVSKA 6 H+VSKA Sbjct: 64 HIVSKA 69>XP_005275746 Length = 3352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3010 HVVNRDTNR 3018>XP_003403671 Length = 3354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3012 HVVNRDTNR 3020>XP_006710003 Length = 3374 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 HVV++ NR Sbjct: 3032 HVVNRDTNR 3040>XP_006710234 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 HVVSKA 6 H+VSKA Sbjct: 64 HIVSKA 69>NP_006422 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVVSKAANR 9 H V++ ANR Sbjct: 419 HAVTQLANR 427Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.115 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 225,308 Number of extensions: 256 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |