Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1482 XP_006716142 18 1482 XP_005250088 18 1482 XP_006716141 18 1482 XP_005250085 18 1482 XP_006716140 18 1482 XP_005250084 18 1482 XP_005250083 18 1482 XP_005250082 18 1482 NP_071504 16 5631 NP_000911 16 5631 NP_001035806 16 5631 XP_006718641 16 5631 XP_005274089 16 5631 XP_005274088 16 5631 XP_006718640 16 5631 NP_000341 16 7355 NP_001004450 16 7355 NP_001171486 15 9605 NP_001171487 15 9605 XP_005246752 15 9605 XP_005246751 15 9605 XP_006712706 15 9605 XP_006712705 15 9605 XP_006712704 15 9605 XP_005246750 15 9605 NP_071341 15 9605>NP_733751 Length = 4911 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 598 TDSLLIAV 605>XP_006716142 Length = 4927 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_005250088 Length = 4928 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_006716141 Length = 4959 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_005250085 Length = 4979 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_006716140 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_005250084 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>XP_005250083 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 598 TDSLLIAV 605>XP_005250082 Length = 4983 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TDSLLIAV Sbjct: 599 TDSLLIAV 606>NP_071504 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>NP_000911 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>NP_001035806 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>XP_006718641 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>XP_005274089 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>XP_005274088 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>XP_006718640 Length = 1178 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H DSLL+ V Sbjct: 421 HYDSLLVKV 429>NP_000341 Length = 2273 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 HTDSLLI 7 H DSLLI Sbjct: 2225 HKDSLLI 2231>NP_001004450 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TDSLLIAV 9 TD+L+IAV Sbjct: 112 TDTLVIAV 119>NP_001171486 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 853 HLDLLMVAV 861>NP_001171487 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 834 HLDLLMVAV 842>XP_005246752 Length = 1117 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 834 HLDLLMVAV 842>XP_005246751 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 864 HLDLLMVAV 872>XP_006712706 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 865 HLDLLMVAV 873>XP_006712705 Length = 1174 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 891 HLDLLMVAV 899>XP_006712704 Length = 1204 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 921 HLDLLMVAV 929>XP_005246750 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 922 HLDLLMVAV 930>NP_071341 Length = 1088 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HTDSLLIAV 9 H D L++AV Sbjct: 823 HLDLLMVAV 831Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.135 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 451,882 Number of extensions: 492 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |