Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 18 1935 NP_001243397 18 1935 XP_005269721 18 1935 NP_060606 17 2528 NP_000159 16 7355 NP_078966 16 7355 NP_055891 16 7355 NP_001640 16 7355 XP_005274557 16 7355 XP_006723004 16 7355 XP_005249761 16 7355 XP_005249760 16 7355 XP_005266929 16 7355 XP_005266928 16 7355 XP_005266927 16 7355 XP_006715465 16 7355 NP_005889 16 7355 NP_976240 16 7355 NP_004689 15 9605 NP_001121367 15 9605 NP_001121368 15 9605 NP_071912 15 9605>NP_036462 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSSRLAVT 9 SSSRLAVT Sbjct: 395 SSSRLAVT 402>NP_001243397 Length = 1890 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSSRLAVT 9 SSSRLAVT Sbjct: 395 SSSRLAVT 402>XP_005269721 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSSRLAVT 9 SSSRLAVT Sbjct: 395 SSSRLAVT 402>NP_060606 Length = 3477 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 HSSSRLAVT 9 HS SR AVT Sbjct: 2812 HSQSRAAVT 2820>NP_000159 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 1533 HSSSRL 1538>NP_078966 Length = 14507 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSSSRLAVT 9 H SS +AVT Sbjct: 10097 HPSSSMAVT 10105>NP_055891 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 460 HSSSRL 465>NP_001640 Length = 1616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 HSSSRLAV 8 H SSRL+V Sbjct: 183 HPSSRLSV 190>XP_005274557 Length = 1615 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 HSSSRLAV 8 H SSRL+V Sbjct: 183 HPSSRLSV 190>XP_006723004 Length = 6443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSSSRLAVT 9 H SS +AVT Sbjct: 2011 HPSSSMAVT 2019>XP_005249761 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 1533 HSSSRL 1538>XP_005249760 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 1533 HSSSRL 1538>XP_005266929 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 287 HSSSRL 292>XP_005266928 Length = 378 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 336 HSSSRL 341>XP_005266927 Length = 418 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 376 HSSSRL 381>XP_006715465 Length = 442 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 HSSSRL 6 HSSSRL Sbjct: 400 HSSSRL 405>NP_005889 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 HSSSRLA 7 HS SRLA Sbjct: 412 HSESRLA 418>NP_976240 Length = 694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 HSSSRLA 7 HS SRLA Sbjct: 412 HSESRLA 418>NP_004689 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 HSSSRLAV 8 H+S+RLA+ Sbjct: 365 HTSTRLAL 372>NP_001121367 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSRLAVT 9 SSSR AVT Sbjct: 170 SSSRRAVT 177>NP_001121368 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSRLAVT 9 SSSR AVT Sbjct: 170 SSSRRAVT 177>NP_071912 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SSSRLAVT 9 SSSR AVT Sbjct: 170 SSSRRAVT 177Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.107 0.262 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 339,594 Number of extensions: 347 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |