Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005227 17 2528 NP_001032394 17 4312 NP_001010861 17 4312 NP_001121369 16 5631 NP_056087 16 5631 NP_064585 16 5631 NP_001269715 16 5631 NP_653327 16 5631 NP_001186312 16 5631 NP_001186311 16 5631 NP_001186310 16 5631 NP_001186309 16 5631 XP_005255928 16 5631 XP_005255927 16 5631 XP_005255926 16 5631 XP_005255925 16 5631 XP_005255924 16 5631 XP_005252595 16 5631 XP_005252594 16 5631 XP_006717543 16 5631 XP_006717542 16 5631 XP_005265883 16 5631 NP_002961 16 7355 NP_116288 16 7355 NP_996889 16 7355 NP_063944 16 7355 NP_001119809 16 7355 XP_006711588 16 7355 XP_005245531 16 7355 NP_064512 16 7355 NP_783864 15 9605 NP_000206 15 9605 NP_055260 15 9605 NP_060613 15 9605 XP_005274821 15 9605 XP_005274817 15 9605 XP_006722808 15 9605 XP_005259953 15 9605 XP_005262701 15 9605 NP_001010897 15 9605>NP_005227 Length = 916 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 HMKNISQMA 9 H+KNI+++A Sbjct: 869 HVKNIAELA 877>NP_001032394 Length = 321 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 HM N++QM Sbjct: 285 HMDNLAQM 292>NP_001010861 Length = 316 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 HM N++QM Sbjct: 285 HMDNLAQM 292>NP_001121369 Length = 1235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 765 HMQSLSQQA 773>NP_056087 Length = 1315 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 765 HMQSLSQQA 773>NP_064585 Length = 225 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 88 HLKNISR 94>NP_001269715 Length = 190 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 88 HLKNISR 94>NP_653327 Length = 691 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 605 HLKNSSQL 612>NP_001186312 Length = 663 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 577 HLKNSSQL 584>NP_001186311 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 591 HLKNSSQL 598>NP_001186310 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 594 HLKNSSQL 601>NP_001186309 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 607 HLKNSSQL 614>XP_005255928 Length = 684 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 180 HMQSLSQQA 188>XP_005255927 Length = 1195 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 769 HMQSLSQQA 777>XP_005255926 Length = 1269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 765 HMQSLSQQA 773>XP_005255925 Length = 1273 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 769 HMQSLSQQA 777>XP_005255924 Length = 1281 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HMKNISQMA 9 HM+++SQ A Sbjct: 765 HMQSLSQQA 773>XP_005252595 Length = 208 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 71 HLKNISR 77>XP_005252594 Length = 208 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 71 HLKNISR 77>XP_006717543 Length = 212 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 75 HLKNISR 81>XP_006717542 Length = 213 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 HMKNISQ 7 H+KNIS+ Sbjct: 76 HLKNISR 82>XP_005265883 Length = 679 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+KN SQ+ Sbjct: 593 HLKNSSQL 600>NP_002961 Length = 171 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MKNISQMA 9 +KN+SQ+A Sbjct: 110 LKNLSQVA 117>NP_116288 Length = 434 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 HMKNIS 6 H+KNIS Sbjct: 214 HLKNIS 219>NP_996889 Length = 367 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 HMKNIS 6 H+KNIS Sbjct: 214 HLKNIS 219>NP_063944 Length = 467 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H KNIS++ Sbjct: 380 HFKNISRI 387>NP_001119809 Length = 365 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H KNI+Q+ Sbjct: 67 HEKNINQL 74>XP_006711588 Length = 279 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H KNI+Q+ Sbjct: 111 HEKNINQL 118>XP_005245531 Length = 409 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H KNI+Q+ Sbjct: 111 HEKNINQL 118>NP_064512 Length = 390 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H KNI+Q+ Sbjct: 92 HEKNINQL 99>NP_783864 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 HMKNIS 6 H+KN+S Sbjct: 117 HLKNVS 122>NP_000206 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+K ISQ+ Sbjct: 821 HLKYISQL 828>NP_055260 Length = 66 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HMKNISQ 7 H KNI+Q Sbjct: 14 HSKNITQ 20>NP_060613 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HMKNISQMA 9 HM +SQ+A Sbjct: 213 HMYTLSQLA 221>XP_005274821 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HMKNISQMA 9 H+K QMA Sbjct: 127 HLKRCQQMA 135>XP_005274817 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HMKNISQMA 9 H+K QMA Sbjct: 195 HLKRCQQMA 203>XP_006722808 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+K ISQ+ Sbjct: 821 HLKYISQL 828>XP_005259953 Length = 1167 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HMKNISQM 8 H+K ISQ+ Sbjct: 864 HLKYISQL 871>XP_005262701 Length = 1035 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 HMKNIS 6 H+KN+S Sbjct: 117 HLKNVS 122>NP_001010897 Length = 65 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HMKNISQ 7 H KNI+Q Sbjct: 14 HSKNITQ 20Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.115 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 383,456 Number of extensions: 627 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |