Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001121619 19 869 NP_000258 19 869 NP_001035957 19 869 XP_006721991 19 869 XP_006721990 19 869 XP_006721989 19 869 XP_005258041 19 869 XP_006721988 19 869 XP_006721987 19 869 XP_006721986 19 869 XP_005258040 19 869 XP_006721985 19 869 NP_689691 17 2528 XP_005258616 17 2528 XP_005258615 17 2528 NP_001153332 17 2528 NP_001153333 17 2528 NP_009149 17 4312 NP_060238 16 5631 XP_005271070 16 5631 XP_006710820 16 5631 NP_060420 16 7355 NP_000112 16 7355 NP_001230271 16 7355 NP_003156 16 7355 NP_078953 16 7355 XP_005257549 16 7355 NP_001027392 16 7355 NP_037514 15 9605 NP_061863 15 9605 NP_065772 15 9605 XP_006724826 15 9605 XP_005271739 15 9605 NP_003469 15 9605 NP_036492 15 9605>NP_001121619 Length = 593 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>NP_000258 Length = 2818 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>NP_001035957 Length = 2839 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721991 Length = 1632 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721990 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721989 Length = 2823 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_005258041 Length = 2836 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721988 Length = 2846 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721987 Length = 2849 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721986 Length = 2854 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 67 YLSQLIILD 75>XP_005258040 Length = 2857 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>XP_006721985 Length = 2867 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 +LSQLIILD Sbjct: 80 YLSQLIILD 88>NP_689691 Length = 569 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 HLSQLII 7 HLSQLII Sbjct: 138 HLSQLII 144>XP_005258616 Length = 526 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 HLSQLII 7 HLSQLII Sbjct: 95 HLSQLII 101>XP_005258615 Length = 570 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 HLSQLII 7 HLSQLII Sbjct: 139 HLSQLII 145>NP_001153332 Length = 569 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 HLSQLII 7 HLSQLII Sbjct: 138 HLSQLII 144>NP_001153333 Length = 569 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 HLSQLII 7 HLSQLII Sbjct: 138 HLSQLII 144>NP_009149 Length = 664 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQLIILD Sbjct: 152 SQLIILD 158>NP_060238 Length = 602 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL+ +++LD Sbjct: 287 HLNSILVLD 295>XP_005271070 Length = 384 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL+ +++LD Sbjct: 69 HLNSILVLD 77>XP_006710820 Length = 432 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL+ +++LD Sbjct: 117 HLNSILVLD 125>NP_060420 Length = 1142 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQL++LD Sbjct: 276 SQLVVLD 282>NP_000112 Length = 508 Score = 15.8 bits (29), Expect = 7355 Identities = 3/9 (33%), Positives = 9/9 (100%) Query: 1 HLSQLIILD 9 H++++++LD Sbjct: 138 HINEVVLLD 146>NP_001230271 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQL++LD Sbjct: 276 SQLVVLD 282>NP_003156 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQL+ILD Sbjct: 228 SQLLILD 234>NP_078953 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 HLSQLIIL 8 HLS LII+ Sbjct: 122 HLSSLIIV 129>XP_005257549 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQL++LD Sbjct: 276 SQLVVLD 282>NP_001027392 Length = 594 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQLIILD 9 SQL+ILD Sbjct: 228 SQLLILD 234>NP_037514 Length = 750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQLIILD 9 LSQ I+LD Sbjct: 189 LSQYILLD 196>NP_061863 Length = 380 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL++L I+D Sbjct: 291 HLNELNIMD 299>NP_065772 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HLSQLIIL 8 H SQL++L Sbjct: 123 HASQLLLL 130>XP_006724826 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL++L I+D Sbjct: 341 HLNELNIMD 349>XP_005271739 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL++ +ILD Sbjct: 398 HLTRRLILD 406>NP_003469 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HLSQLIILD 9 HL++ +ILD Sbjct: 457 HLTRRLILD 465>NP_036492 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 HLSQLIIL 8 HL+++IIL Sbjct: 193 HLNEVIIL 200Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.152 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 391,074 Number of extensions: 711 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |