Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_733751                                                              18    1135
XP_006716142                                                           18    1135
XP_005250088                                                           18    1135
XP_006716141                                                           18    1135
XP_005250085                                                           18    1135
XP_006716140                                                           18    1135
XP_005250084                                                           18    1135
XP_005250083                                                           18    1135
XP_005250082                                                           18    1135
NP_001230925                                                           17    3301
NP_001027                                                              17    3301
NP_001155048                                                           16    5631
NP_056404                                                              16    5631
NP_000531                                                              16    5631
NP_001036188                                                           16    5631
NP_001026                                                              16    5631
NP_115518                                                              16    5631
NP_060600                                                              16    5631
XP_006723382                                                           16    5631
XP_006723381                                                           16    5631
XP_006723380                                                           16    5631
XP_006722394                                                           16    5631
XP_005258167                                                           16    5631
XP_006722393                                                           16    5631
XP_006722392                                                           16    5631
XP_006722391                                                           16    5631
XP_006722390                                                           16    5631
XP_005258166                                                           16    5631
XP_006722389                                                           16    5631
XP_005258165                                                           16    5631
XP_005258164                                                           16    5631
XP_006711873                                                           16    5631
XP_006711871                                                           16    5631
XP_006711870                                                           16    5631
XP_006711869                                                           16    5631
XP_006711868                                                           16    5631
XP_006711867                                                           16    5631
XP_006711866                                                           16    5631
XP_006711865                                                           16    5631
NP_061837                                                              16    7355
NP_001094299                                                           16    7355
XP_005261198                                                           16    7355
XP_006724079                                                           16    7355
XP_006724078                                                           16    7355
XP_006724077                                                           16    7355
XP_005261197                                                           16    7355
XP_005261196                                                           16    7355
NP_001157284                                                           15    9605
NP_068602                                                              15    9605
NP_997320                                                              15    9605
NP_057315                                                              15    9605
NP_001171668                                                           15    9605
NP_777604                                                              15    9605
XP_005258045                                                           15    9605
XP_005267602                                                           15    9605
XP_005253612                                                           15    9605
>NP_733751
          Length = 4911

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4866 HKIIISSSR 4874
>XP_006716142
          Length = 4927

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4882 HKIIISSSR 4890
>XP_005250088
          Length = 4928

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4883 HKIIISSSR 4891
>XP_006716141
          Length = 4959

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4914 HKIIISSSR 4922
>XP_005250085
          Length = 4979

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4934 HKIIISSSR 4942
>XP_006716140
          Length = 4982

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4937 HKIIISSSR 4945
>XP_005250084
          Length = 4982

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4937 HKIIISSSR 4945
>XP_005250083
          Length = 4982

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4937 HKIIISSSR 4945
>XP_005250082
          Length = 4983

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            HKIIIS SR
Sbjct: 4938 HKIIISSSR 4946
>NP_001230925
          Length = 4865

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H+II+ FSR
Sbjct: 3549 HQIILYFSR 3557
>NP_001027
          Length = 4870

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H+II+ FSR
Sbjct: 3554 HQIILYFSR 3562
>NP_001155048
          Length = 630

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   HKIIISFSR 9
           HKI+IS  +
Sbjct: 283 HKIVISIQK 291
>NP_056404
          Length = 718

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   HKIIISFSR 9
           HKI+IS  +
Sbjct: 371 HKIVISIQK 379
>NP_000531
          Length = 5038

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++++ FSR
Sbjct: 3699 HQLVLHFSR 3707
>NP_001036188
          Length = 5033

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++++ FSR
Sbjct: 3694 HQLVLHFSR 3702
>NP_001026
          Length = 4967

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3665 HQLILLFSR 3673
>NP_115518
          Length = 2537

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1708 HEVIVSFT 1715
>NP_060600
          Length = 577

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   HKIIISFSR 9
           H I++SF R
Sbjct: 318 HDIMVSFGR 326
>XP_006723382
          Length = 5027

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++++ FSR
Sbjct: 3694 HQLVLHFSR 3702
>XP_006723381
          Length = 5031

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++++ FSR
Sbjct: 3698 HQLVLHFSR 3706
>XP_006723380
          Length = 5032

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++++ FSR
Sbjct: 3699 HQLVLHFSR 3707
>XP_006722394
          Length = 1845

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1015 HEVIVSFT 1022
>XP_005258167
          Length = 1856

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1026 HEVIVSFT 1033
>XP_006722393
          Length = 2199

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1369 HEVIVSFT 1376
>XP_006722392
          Length = 2444

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1614 HEVIVSFT 1621
>XP_006722391
          Length = 2448

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1618 HEVIVSFT 1625
>XP_006722390
          Length = 2467

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1638 HEVIVSFT 1645
>XP_005258166
          Length = 2468

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1638 HEVIVSFT 1645
>XP_006722389
          Length = 2506

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1708 HEVIVSFT 1715
>XP_005258165
          Length = 2534

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1704 HEVIVSFT 1711
>XP_005258164
          Length = 2538

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    HKIIISFS 8
            H++I+SF+
Sbjct: 1708 HEVIVSFT 1715
>XP_006711873
          Length = 4954

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3652 HQLILLFSR 3660
>XP_006711871
          Length = 4906

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3596 HQLILLFSR 3604
>XP_006711870
          Length = 4965

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3663 HQLILLFSR 3671
>XP_006711869
          Length = 4973

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3663 HQLILLFSR 3671
>XP_006711868
          Length = 4975

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3665 HQLILLFSR 3673
>XP_006711867
          Length = 4977

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3675 HQLILLFSR 3683
>XP_006711866
          Length = 4984

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3674 HQLILLFSR 3682
>XP_006711865
          Length = 4985

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    HKIIISFSR 9
            H++I+ FSR
Sbjct: 3675 HQLILLFSR 3683
>NP_061837
          Length = 533

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>NP_001094299
          Length = 132

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   IIISFSR 9
           +IISFSR
Sbjct: 121 LIISFSR 127
>XP_005261198
          Length = 533

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>XP_006724079
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>XP_006724078
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>XP_006724077
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>XP_005261197
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>XP_005261196
          Length = 562

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  KIIISFSR 9
          + IISFSR
Sbjct: 9  RFIISFSR 16
>NP_001157284
          Length = 582

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   HKIIISF 7
           HK I+SF
Sbjct: 364 HKSIVSF 370
>NP_068602
          Length = 684

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   HKIIISF 7
           HK I+SF
Sbjct: 364 HKSIVSF 370
>NP_997320
          Length = 4471

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 1    HKIIISFS 8
            HK++ SF+
Sbjct: 3723 HKLLFSFN 3730
>NP_057315
          Length = 527

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 1   HKIIIS 6
           HKII+S
Sbjct: 227 HKIIVS 232
>NP_001171668
          Length = 338

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1  HKIIISFSR 9
          HK +I+F R
Sbjct: 82 HKYLINFYR 90
>NP_777604
          Length = 328

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1  HKIIISFSR 9
          HK +I+F R
Sbjct: 82 HKYLINFYR 90
>XP_005258045
          Length = 498

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 1   HKIIIS 6
           HKII+S
Sbjct: 227 HKIIVS 232
>XP_005267602
          Length = 301

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1  HKIIISFSR 9
          HK +I+F R
Sbjct: 82 HKYLINFYR 90
>XP_005253612
          Length = 4589

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 1    HKIIISFS 8
            HK++ SF+
Sbjct: 3841 HKLLFSFN 3848
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.341    0.147    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 391,257
Number of extensions: 736
Number of successful extensions: 56
Number of sequences better than 10000.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.6 bits)
S2: 28 (15.4 bits)

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