Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005245596 17 4312 NP_003559 17 4312 NP_065961 16 5631 NP_001158137 16 5631 XP_006716134 16 5631 NP_005268 16 7355 NP_963885 16 7355 NP_001008 16 7355 NP_001248377 16 7355 NP_001248376 16 7355 NP_963886 16 7355 NP_112236 16 7355 XP_006714246 16 7355>XP_005245596 Length = 362 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HGAAQIAMV 9 HG AQ+A++ Sbjct: 254 HGDAQVALL 262>NP_003559 Length = 345 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 HGAAQIAMV 9 HG AQ+A++ Sbjct: 254 HGDAQVALL 262>NP_065961 Length = 1934 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HGAAQIAM 8 H AAQ+A+ Sbjct: 87 HSAAQVAL 94>NP_001158137 Length = 1950 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HGAAQIAM 8 H AAQ+A+ Sbjct: 87 HSAAQVAL 94>XP_006716134 Length = 1847 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 HGAAQIAM 8 H AAQ+A+ Sbjct: 11 HSAAQVAL 18>NP_005268 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 222 GAAVIAMV 229>NP_963885 Length = 278 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 222 GAAVIAMV 229>NP_001008 Length = 151 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HGAAQIAMV 9 HG AQ+ V Sbjct: 58 HGVAQVRFV 66>NP_001248377 Length = 271 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 215 GAAVIAMV 222>NP_001248376 Length = 243 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 187 GAAVIAMV 194>NP_963886 Length = 267 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 211 GAAVIAMV 218>NP_112236 Length = 387 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAAQ+A V Sbjct: 190 GAAQVAAV 197>XP_006714246 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GAAQIAMV 9 GAA IAMV Sbjct: 159 GAAVIAMV 166Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.127 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 244,836 Number of extensions: 144 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |