Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 XP_005275817 16 5631 NP_001035089 16 7355 NP_001193937 16 7355 NP_001919 16 7355 NP_149977 16 7355 XP_005262012 16 7355 XP_006715557 16 7355 XP_006715556 16 7355 XP_006715555 16 7355 XP_006715554 16 7355 XP_006715553 16 7355 XP_006715552 16 7355 XP_005267054 16 7355 XP_005267053 16 7355 XP_006715551 16 7355 XP_006715550 16 7355 XP_006715549 16 7355 XP_006715548 16 7355 XP_006715547 16 7355 XP_006715546 16 7355 NP_612567 15 9605 NP_003257 15 9605 NP_612564 15 9605 NP_079031 15 9605 NP_001013865 15 9605 NP_001005205 15 9605 XP_005254726 15 9605 XP_006720752 15 9605 XP_006720751 15 9605 XP_006720750 15 9605 XP_006720749 15 9605 XP_006720748 15 9605 NP_001004064 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GVVTMTSR 8 GVVTMTSR Sbjct: 1022 GVVTMTSR 1029>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GVVTMTSR 8 GVVTMTSR Sbjct: 1022 GVVTMTSR 1029>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GVVTMTSR 8 GVVTMTSR Sbjct: 1022 GVVTMTSR 1029>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GVVTMTSR 8 GVVTMTSR Sbjct: 1022 GVVTMTSR 1029>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GVVTMTSR 8 GVVTMTSR Sbjct: 1022 GVVTMTSR 1029>XP_005275817 Length = 254 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GVVTMTSRV 9 GVV +TSR+ Sbjct: 49 GVVWVTSRI 57>NP_001035089 Length = 1651 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 457 GVVTVTPR 464>NP_001193937 Length = 1743 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 441 GVVTVTPR 448>NP_001919 Length = 253 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GVVTMTSRV 9 GVVT SRV Sbjct: 220 GVVTSGSRV 228>NP_149977 Length = 707 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVV +TSR Sbjct: 183 GVVKLTSR 190>XP_005262012 Length = 682 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVV +TSR Sbjct: 158 GVVKLTSR 165>XP_006715557 Length = 1744 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 441 GVVTVTPR 448>XP_006715556 Length = 1051 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_006715555 Length = 1638 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_006715554 Length = 1768 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_006715553 Length = 1808 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 441 GVVTVTPR 448>XP_006715552 Length = 1817 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 443 GVVTVTPR 450>XP_005267054 Length = 1823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_005267053 Length = 1824 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 457 GVVTVTPR 464>XP_006715551 Length = 1825 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_006715550 Length = 1830 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>XP_006715549 Length = 1830 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 456 GVVTVTPR 463>XP_006715548 Length = 1831 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 457 GVVTVTPR 464>XP_006715547 Length = 1831 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 457 GVVTVTPR 464>XP_006715546 Length = 1832 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVVTMTSR 8 GVVT+T R Sbjct: 458 GVVTVTPR 465>NP_612567 Length = 639 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 GV+TM+S Sbjct: 210 GVITMSS 216>NP_003257 Length = 799 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 GV+TM+S Sbjct: 370 GVITMSS 376>NP_612564 Length = 839 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 GV+TM+S Sbjct: 410 GVITMSS 416>NP_079031 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 428 GIVTMSS 434>NP_001013865 Length = 1016 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 410 GIVTMSS 416>NP_001005205 Length = 316 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G++T+TS Sbjct: 44 GIITLTS 50>XP_005254726 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 563 GIVTMSS 569>XP_006720752 Length = 981 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 375 GIVTMSS 381>XP_006720751 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 462 GIVTMSS 468>XP_006720750 Length = 1069 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 463 GIVTMSS 469>XP_006720749 Length = 1087 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 481 GIVTMSS 487>XP_006720748 Length = 1150 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G+VTM+S Sbjct: 544 GIVTMSS 550>NP_001004064 Length = 315 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVVTMTS 7 G++T+TS Sbjct: 44 GIITLTS 50Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.126 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 269,545 Number of extensions: 374 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |