Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275955 17 3301 XP_005258977 17 3301 XP_006726221 17 3301 XP_005277168 17 3301 NP_001252506 16 5631 NP_001251503 16 5631 NP_057686 16 5631 XP_006723106 16 5631 XP_006723105 16 5631 XP_005257134 16 5631 NP_604393 16 5631 NP_001004465 16 5631 NP_039226 16 5631 NP_064585 16 7355 NP_001269665 16 7355 NP_116201 16 7355 NP_001269715 16 7355 NP_054788 16 7355 NP_444512 16 7355 XP_005252595 16 7355 XP_005252594 16 7355 XP_006717543 16 7355 XP_006717542 16 7355 XP_006710375 16 7355 XP_006710374 16 7355 XP_005270464 16 7355 XP_005270463 16 7355 XP_005270462 16 7355 XP_006710373 16 7355 XP_005270461 16 7355 NP_003954 16 7355 NP_443724 16 7355 NP_001269282 15 9605 NP_000879 15 9605 NP_001269318 15 9605 NP_001171655 15 9605 NP_001269317 15 9605 NP_001269319 15 9605 NP_000346 15 9605 NP_001019572 15 9605 NP_001269283 15 9605 NP_001269284 15 9605 XP_005255372 15 9605 NP_006444 15 9605>NP_001275955 Length = 280 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MVLCVAQ 9 MVLC+AQ Sbjct: 5 MVLCLAQ 11>XP_005258977 Length = 281 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MVLCVAQ 9 MVLC+AQ Sbjct: 5 MVLCLAQ 11>XP_006726221 Length = 281 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MVLCVAQ 9 MVLC+AQ Sbjct: 5 MVLCLAQ 11>XP_005277168 Length = 281 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MVLCVAQ 9 MVLC+AQ Sbjct: 5 MVLCLAQ 11>NP_001252506 Length = 852 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VLCVAQ 9 VLCVAQ Sbjct: 511 VLCVAQ 516>NP_001251503 Length = 833 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VLCVAQ 9 VLCVAQ Sbjct: 523 VLCVAQ 528>NP_057686 Length = 362 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GVMVLCVA 8 GVMV C A Sbjct: 221 GVMVACYA 228>XP_006723106 Length = 971 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVMVLCVA 8 GV+VLC A Sbjct: 914 GVVVLCEA 921>XP_006723105 Length = 1028 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVMVLCVA 8 GV+VLC A Sbjct: 971 GVVVLCEA 978>XP_005257134 Length = 842 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VLCVAQ 9 VLCVAQ Sbjct: 532 VLCVAQ 537>NP_604393 Length = 994 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVMVLCVA 8 GV+VLC A Sbjct: 937 GVVVLCEA 944>NP_001004465 Length = 316 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GVM++CV Sbjct: 200 GVMLVCV 206>NP_039226 Length = 316 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GVM++CV Sbjct: 200 GVMLVCV 206>NP_064585 Length = 225 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 69 IMVLCV 74>NP_001269665 Length = 480 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GVMVLC 6 GVM+LC Sbjct: 13 GVMLLC 18>NP_116201 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GVMVLC 6 GVM+LC Sbjct: 13 GVMLLC 18>NP_001269715 Length = 190 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 69 IMVLCV 74>NP_054788 Length = 136 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 G++VLC+ Sbjct: 9 GILVLCL 15>NP_444512 Length = 132 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVMVLCVA 8 GV+ LCV+ Sbjct: 38 GVLCLCVS 45>XP_005252595 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 52 IMVLCV 57>XP_005252594 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 52 IMVLCV 57>XP_006717543 Length = 212 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 56 IMVLCV 61>XP_006717542 Length = 213 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VMVLCV 7 +MVLCV Sbjct: 57 IMVLCV 62>XP_006710375 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 1 MVLCIA 6>XP_006710374 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 1 MVLCIA 6>XP_005270464 Length = 365 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 57 MVLCIA 62>XP_005270463 Length = 402 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 94 MVLCIA 99>XP_005270462 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 152 MVLCIA 157>XP_006710373 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 152 MVLCIA 157>XP_005270461 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 152 MVLCIA 157>NP_003954 Length = 197 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GVMVLC 6 G+MVLC Sbjct: 57 GLMVLC 62>NP_443724 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MVLCVA 8 MVLC+A Sbjct: 152 MVLCIA 157>NP_001269282 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 723 GVVLLCI 729>NP_000879 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 723 GVVLLCI 729>NP_001269318 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 650 GVVLLCI 656>NP_001171655 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GVMVLCVAQ 9 G++ LC+ Q Sbjct: 133 GILALCLHQ 141>NP_001269317 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 681 GVVLLCI 687>NP_001269319 Length = 650 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 585 GVVLLCI 591>NP_000346 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GVMVLCVAQ 9 G++ LC+ Q Sbjct: 160 GILALCLHQ 168>NP_001019572 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GVMVLCV 7 GV++ CV Sbjct: 240 GVLIFCV 246>NP_001269283 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 628 GVVLLCI 634>NP_001269284 Length = 681 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GVMVLCV 7 GV++LC+ Sbjct: 616 GVVLLCI 622>XP_005255372 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GVMVLCV 7 GV++ CV Sbjct: 274 GVLIFCV 280>NP_006444 Length = 808 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VLCVAQ 9 V+CVAQ Sbjct: 411 VMCVAQ 416Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.142 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 519,013 Number of extensions: 560 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |