Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 19 665 NP_000242 19 665 XP_005264389 19 665 NP_060060 18 1935 XP_005250956 17 3301 NP_000828 17 3301 NP_001009184 17 3301 NP_653251 17 4312 NP_038479 16 5631 NP_579899 16 5631 NP_620417 16 5631 NP_001171582 16 5631 NP_001171583 16 5631 XP_006720485 16 5631 XP_006720484 16 5631 XP_006720483 16 5631 XP_006717823 16 5631 XP_005269751 16 5631 XP_005269750 16 5631 NP_689501 16 7355 NP_851322 16 7355 NP_660159 15 9605 NP_116317 15 9605 NP_001028755 15 9605 NP_055793 15 9605 NP_001032248 15 9605 NP_001275929 15 9605 NP_001275930 15 9605 NP_705837 15 9605 NP_996531 15 9605 XP_005274529 15 9605 XP_005274528 15 9605 XP_005274527 15 9605 XP_006724226 15 9605 XP_006724225 15 9605 XP_005254088 15 9605 XP_006719978 15 9605 XP_005254087 15 9605 XP_006715412 15 9605 XP_005247166 15 9605 NP_073623 15 9605 NP_001073909 15 9605 NP_001004684 15 9605 NP_001004692 15 9605>NP_001245210 Length = 868 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 GV TFMAEM Sbjct: 655 GVSTFMAEM 663>NP_000242 Length = 934 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 GV TFMAEM Sbjct: 721 GVSTFMAEM 729>XP_005264389 Length = 921 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 GV TFMAEM Sbjct: 721 GVSTFMAEM 729>NP_060060 Length = 977 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 G+FTF+ E+ Sbjct: 548 GIFTFLCEI 556>XP_005250956 Length = 371 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VFTFMAEM 9 VFTF+AE+ Sbjct: 182 VFTFVAEV 189>NP_000828 Length = 371 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VFTFMAEM 9 VFTF+AE+ Sbjct: 182 VFTFVAEV 189>NP_001009184 Length = 371 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VFTFMAEM 9 VFTF+AE+ Sbjct: 182 VFTFVAEV 189>NP_653251 Length = 467 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFTFMAEM 9 VFTF A+M Sbjct: 368 VFTFTAQM 375>NP_038479 Length = 2061 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVFTFMAEM 9 G FT AEM Sbjct: 855 GTFTVFAEM 863>NP_579899 Length = 2048 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVFTFMAEM 9 G FT AEM Sbjct: 842 GTFTVFAEM 850>NP_620417 Length = 235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 110 FTFMAQL 116>NP_001171582 Length = 235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 110 FTFMAQL 116>NP_001171583 Length = 235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 110 FTFMAQL 116>XP_006720485 Length = 164 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 39 FTFMAQL 45>XP_006720484 Length = 235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 110 FTFMAQL 116>XP_006720483 Length = 253 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FTFMAEM 9 FTFMA++ Sbjct: 128 FTFMAQL 134>XP_006717823 Length = 1938 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVFTFMAEM 9 G FT AEM Sbjct: 713 GTFTVFAEM 721>XP_005269751 Length = 2067 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVFTFMAEM 9 G FT AEM Sbjct: 842 GTFTVFAEM 850>XP_005269750 Length = 2080 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVFTFMAEM 9 G FT AEM Sbjct: 855 GTFTVFAEM 863>NP_689501 Length = 295 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVFTFMAEM 9 G F F+AE+ Sbjct: 158 GTFLFLAEV 166>NP_851322 Length = 724 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VFTFMA 7 +FTFMA Sbjct: 589 IFTFMA 594>NP_660159 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 G+FTF++ + Sbjct: 37 GMFTFLSSV 45>NP_116317 Length = 108 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GVFTFM 6 GVFTF+ Sbjct: 34 GVFTFV 39>NP_001028755 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTFM+E Sbjct: 393 FTFMSE 398>NP_055793 Length = 1222 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTF+AE Sbjct: 967 FTFLAE 972>NP_001032248 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTFM+E Sbjct: 402 FTFMSE 407>NP_001275929 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 5/8 (62%) Query: 1 GVFTFMAE 8 G FTF E Sbjct: 523 GTFTFQCE 530>NP_001275930 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 5/8 (62%) Query: 1 GVFTFMAE 8 G FTF E Sbjct: 523 GTFTFQCE 530>NP_705837 Length = 811 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 5/8 (62%) Query: 1 GVFTFMAE 8 G FTF E Sbjct: 532 GTFTFQCE 539>NP_996531 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 5/9 (55%) Query: 1 GVFTFMAEM 9 G FTF M Sbjct: 310 GAFTFQGSM 318>XP_005274529 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTFM+E Sbjct: 333 FTFMSE 338>XP_005274528 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTFM+E Sbjct: 333 FTFMSE 338>XP_005274527 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 FTFMAE 8 FTFM+E Sbjct: 405 FTFMSE 410>XP_006724226 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 5/8 (62%) Query: 1 GVFTFMAE 8 G FTF E Sbjct: 523 GTFTFQCE 530>XP_006724225 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 5/8 (62%) Query: 1 GVFTFMAE 8 G FTF E Sbjct: 523 GTFTFQCE 530>XP_005254088 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 5/9 (55%) Query: 1 GVFTFMAEM 9 G FTF M Sbjct: 276 GAFTFQGSM 284>XP_006719978 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 5/9 (55%) Query: 1 GVFTFMAEM 9 G FTF M Sbjct: 310 GAFTFQGSM 318>XP_005254087 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 5/9 (55%) Query: 1 GVFTFMAEM 9 G FTF M Sbjct: 310 GAFTFQGSM 318>XP_006715412 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GVFTFMAEM 9 G+FTF++ + Sbjct: 37 GMFTFLSSV 45>XP_005247166 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFTFMAEM 9 +FT MAEM Sbjct: 58 LFTEMAEM 65>NP_073623 Length = 271 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVFTFM 6 G+FTF+ Sbjct: 157 GIFTFL 162>NP_001073909 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFTFMAEM 9 +FT MAEM Sbjct: 58 LFTEMAEM 65>NP_001004684 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVFTFM 6 G+FT+M Sbjct: 271 GIFTYM 276>NP_001004692 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVFTFM 6 G+FT+M Sbjct: 253 GIFTYM 258Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.143 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 345,096 Number of extensions: 383 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |