Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 20 299 NP_001017408 17 3301 NP_065132 17 3301 NP_001239049 17 4312 NP_055963 17 4312 NP_001239053 17 4312 NP_001239051 17 4312 NP_001239048 17 4312 XP_005247048 17 4312 XP_005247047 17 4312 NP_001539 16 5631 NP_001257856 16 5631 NP_001257859 16 5631 NP_001257857 16 5631 NP_001257858 16 5631 NP_001167565 16 7355 NP_001167566 16 7355 NP_110378 16 7355 NP_001167567 16 7355 NP_001167564 16 7355 NP_001121600 16 7355 NP_036300 16 7355 NP_056121 16 7355 NP_001129687 16 7355 NP_476432 16 7355 XP_005252632 16 7355 XP_005252633 16 7355 XP_006717562 16 7355 XP_006717561 16 7355 XP_006717560 16 7355 XP_005265863 16 7355 XP_006711087 16 7355 XP_006711086 16 7355 XP_005270747 16 7355 XP_006710574 16 7355 XP_005270746 16 7355 NP_476431 16 7355 NP_443131 16 7355 NP_001230588 15 9605 NP_689691 15 9605 NP_001112362 15 9605 NP_653295 15 9605 NP_002055 15 9605 NP_065879 15 9605 NP_001230587 15 9605 XP_005258624 15 9605 XP_005258622 15 9605 XP_005258616 15 9605 XP_005258615 15 9605 NP_001153332 15 9605 NP_001153333 15 9605>NP_004351 Length = 882 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GVCRKAQSV 9 GVCRKAQ V Sbjct: 693 GVCRKAQPV 701>NP_001017408 Length = 454 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VCRKAQSV 9 +C KAQSV Sbjct: 80 LCHKAQSV 87>NP_065132 Length = 462 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VCRKAQSV 9 +C KAQSV Sbjct: 80 LCHKAQSV 87>NP_001239049 Length = 1323 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 566 GLCQKAQ 572>NP_055963 Length = 1323 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 566 GLCQKAQ 572>NP_001239053 Length = 1143 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 566 GLCQKAQ 572>NP_001239051 Length = 1288 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 531 GLCQKAQ 537>NP_001239048 Length = 1330 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 566 GLCQKAQ 572>XP_005247048 Length = 1107 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 350 GLCQKAQ 356>XP_005247047 Length = 1137 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GVCRKAQ 7 G+C+KAQ Sbjct: 380 GLCQKAQ 386>NP_001539 Length = 478 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C KAQ + Sbjct: 292 GLCYKAQMI 300>NP_001257856 Length = 478 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C KAQ + Sbjct: 292 GLCYKAQMI 300>NP_001257859 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C KAQ + Sbjct: 261 GLCYKAQMI 269>NP_001257857 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C KAQ + Sbjct: 261 GLCYKAQMI 269>NP_001257858 Length = 447 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C KAQ + Sbjct: 261 GLCYKAQMI 269>NP_001167565 Length = 1107 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 918 GICKKA 923>NP_001167566 Length = 1057 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 868 GICKKA 873>NP_110378 Length = 1124 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 935 GICKKA 940>NP_001167567 Length = 1125 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 936 GICKKA 941>NP_001167564 Length = 1104 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 915 GICKKA 920>NP_001121600 Length = 1108 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 919 GICKKA 924>NP_036300 Length = 296 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CRKAQSV 9 CRKAQ + Sbjct: 176 CRKAQVI 182>NP_056121 Length = 2620 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C + QSV Sbjct: 1391 GICVRQQSV 1399>NP_001129687 Length = 228 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVCRKAQS 8 G CR+A+S Sbjct: 160 GSCRRARS 167>NP_476432 Length = 220 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVCRKAQS 8 G CR+A+S Sbjct: 152 GSCRRARS 159>XP_005252632 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 717 GICKKA 722>XP_005252633 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 717 GICKKA 722>XP_006717562 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 717 GICKKA 722>XP_006717561 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 717 GICKKA 722>XP_006717560 Length = 906 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 GVCRKA 6 G+C+KA Sbjct: 717 GICKKA 722>XP_005265863 Length = 1008 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GVCRKAQ 7 G CRKA+ Sbjct: 673 GSCRKAE 679>XP_006711087 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVCRKAQS 8 G CR+A+S Sbjct: 169 GSCRRARS 176>XP_006711086 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVCRKAQS 8 G CR+A+S Sbjct: 169 GSCRRARS 176>XP_005270747 Length = 2025 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C + QSV Sbjct: 796 GICVRQQSV 804>XP_006710574 Length = 2445 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C + QSV Sbjct: 1216 GICVRQQSV 1224>XP_005270746 Length = 2443 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GVCRKAQSV 9 G+C + QSV Sbjct: 1216 GICVRQQSV 1224>NP_476431 Length = 228 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GVCRKAQS 8 G CR+A+S Sbjct: 160 GSCRRARS 167>NP_443131 Length = 1008 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GVCRKAQ 7 G CRKA+ Sbjct: 673 GSCRKAE 679>NP_001230588 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 CRKAQSV 9 CR+AQ + Sbjct: 26 CRRAQEI 32>NP_689691 Length = 569 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 412 VCRKAFS 418>NP_001112362 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 CRKAQSV 9 CR+AQ + Sbjct: 26 CRRAQEI 32>NP_653295 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 306 VCRKAFS 312>NP_002055 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 CRKAQSV 9 CR+AQ + Sbjct: 26 CRRAQEI 32>NP_065879 Length = 868 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 565 VCRKAFS 571>NP_001230587 Length = 106 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 CRKAQSV 9 CR+AQ + Sbjct: 26 CRRAQEI 32>XP_005258624 Length = 333 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 103 VCRKAFS 109>XP_005258622 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 362 VCRKAFS 368>XP_005258616 Length = 526 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 369 VCRKAFS 375>XP_005258615 Length = 570 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 413 VCRKAFS 419>NP_001153332 Length = 569 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 412 VCRKAFS 418>NP_001153333 Length = 569 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VCRKAQS 8 VCRKA S Sbjct: 412 VCRKAFS 418Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.128 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 534,614 Number of extensions: 345 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |