Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_006723199 17 4312 XP_006723198 17 4312 XP_006723197 17 4312 XP_006723196 17 4312 NP_056418 17 4312 NP_001239049 16 5631 NP_055963 16 5631 NP_001239053 16 5631 NP_001239051 16 5631 NP_001239048 16 5631 XP_003960784 16 5631 XP_005276355 16 5631 XP_938432 16 5631 XP_005250801 16 5631 XP_005247048 16 5631 XP_005247047 16 5631 XP_005275869 16 5631 XP_005276060 16 5631 NP_001924 16 7355 NP_036342 15 9605 NP_001093149 15 9605 NP_001243210 15 9605 NP_001164015 15 9605 NP_443141 15 9605 NP_612490 15 9605 NP_072174 15 9605 NP_006050 15 9605 NP_612642 15 9605 NP_001164014 15 9605 XP_005261428 15 9605 XP_005261427 15 9605 XP_005251870 15 9605 XP_006716984 15 9605 XP_006714509 15 9605 XP_006712785 15 9605 XP_005246883 15 9605 XP_005246882 15 9605 XP_006712784 15 9605>XP_006723199 Length = 505 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVAVASPR 8 GVAV +PR Sbjct: 49 GVAVTAPR 56>XP_006723198 Length = 587 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVAVASPR 8 GVAV +PR Sbjct: 49 GVAVTAPR 56>XP_006723197 Length = 587 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVAVASPR 8 GVAV +PR Sbjct: 49 GVAVTAPR 56>XP_006723196 Length = 587 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVAVASPR 8 GVAV +PR Sbjct: 49 GVAVTAPR 56>NP_056418 Length = 531 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GVAVASPR 8 GVAV +PR Sbjct: 49 GVAVTAPR 56>NP_001239049 Length = 1323 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 589 GAAVAKPQA 597>NP_055963 Length = 1323 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 589 GAAVAKPQA 597>NP_001239053 Length = 1143 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 589 GAAVAKPQA 597>NP_001239051 Length = 1288 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 554 GAAVAKPQA 562>NP_001239048 Length = 1330 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 589 GAAVAKPQA 597>XP_003960784 Length = 337 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VAVASPRA 9 VAVA+P+A Sbjct: 173 VAVAAPKA 180>XP_005276355 Length = 233 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GVAVASP 7 G+AVASP Sbjct: 38 GLAVASP 44>XP_938432 Length = 337 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VAVASPRA 9 VAVA+P+A Sbjct: 173 VAVAAPKA 180>XP_005250801 Length = 233 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GVAVASP 7 G+AVASP Sbjct: 38 GLAVASP 44>XP_005247048 Length = 1107 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 373 GAAVAKPQA 381>XP_005247047 Length = 1137 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GVAVASPRA 9 G AVA P+A Sbjct: 403 GAAVAKPQA 411>XP_005275869 Length = 337 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VAVASPRA 9 VAVA+P+A Sbjct: 173 VAVAAPKA 180>XP_005276060 Length = 233 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GVAVASP 7 G+AVASP Sbjct: 38 GLAVASP 44>NP_001924 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VAVASPR 8 VAVA+PR Sbjct: 319 VAVATPR 325>NP_036342 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VASPRA 9 VASPRA Sbjct: 333 VASPRA 338>NP_001093149 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VASPRA 9 VASPRA Sbjct: 333 VASPRA 338>NP_001243210 Length = 198 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 VAVASPR 8 V VASPR Sbjct: 92 VVVASPR 98>NP_001164015 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VAVASPRA 9 VAV PRA Sbjct: 26 VAVGKPRA 33>NP_443141 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVAVASPRA 9 GVAV P A Sbjct: 568 GVAVLKPHA 576>NP_612490 Length = 762 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 372 AVAGPRA 378>NP_072174 Length = 1735 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 1033 AVAGPRA 1039>NP_006050 Length = 1575 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GVAVASPRA 9 G+A+ +PRA Sbjct: 9 GLALLAPRA 17>NP_612642 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VAVASPRA 9 VAV PRA Sbjct: 26 VAVGKPRA 33>NP_001164014 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VAVASPRA 9 VAV PRA Sbjct: 26 VAVGKPRA 33>XP_005261428 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 372 AVAGPRA 378>XP_005261427 Length = 771 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 372 AVAGPRA 378>XP_005251870 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 VASPRA 9 VASPRA Sbjct: 333 VASPRA 338>XP_006716984 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GVAVASPRA 9 G+A+ +PRA Sbjct: 9 GLALLAPRA 17>XP_006714509 Length = 1627 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GVAVASPRA 9 GVAV P A Sbjct: 924 GVAVLKPHA 932>XP_006712785 Length = 1352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 650 AVAGPRA 656>XP_005246883 Length = 1352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 650 AVAGPRA 656>XP_005246882 Length = 1518 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 816 AVAGPRA 822>XP_006712784 Length = 1784 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 AVASPRA 9 AVA PRA Sbjct: 1082 AVAGPRA 1088Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.122 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 709,174 Number of extensions: 997 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |