Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001257436 20 390 NP_001257437 20 390 NP_006281 20 390 XP_006715618 20 390 XP_005267176 20 390 NP_005758 17 3301 NP_001155969 17 3301 NP_001155970 17 3301 NP_001191385 17 4312 NP_066986 17 4312 NP_001184113 16 5631 NP_061759 16 5631 NP_945189 16 7355 NP_004604 16 7355 NP_478129 16 7355 XP_005270164 16 7355 NP_001273171 15 9605 NP_001511 15 9605 NP_001258733 15 9605 NP_002616 15 9605 NP_573439 15 9605 NP_573438 15 9605 NP_001181930 15 9605 NP_005695 15 9605 NP_002502 15 9605 NP_001258734 15 9605 XP_005262071 15 9605 XP_006721105 15 9605 XP_006712514 15 9605 XP_006710336 15 9605 XP_006710335 15 9605 XP_006710334 15 9605 XP_006710333 15 9605 XP_006710332 15 9605>NP_001257436 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GTT+LINAA Sbjct: 320 GTTHLINAA 328>NP_001257437 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GTT+LINAA Sbjct: 320 GTTHLINAA 328>NP_006281 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GTT+LINAA Sbjct: 320 GTTHLINAA 328>XP_006715618 Length = 577 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GTT+LINAA Sbjct: 107 GTTHLINAA 115>XP_005267176 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GTT+LINAA Sbjct: 320 GTTHLINAA 328>NP_005758 Length = 344 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 TTY+IN A Sbjct: 53 TTYMINLA 60>NP_001155969 Length = 344 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 TTY+IN A Sbjct: 53 TTYMINLA 60>NP_001155970 Length = 344 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 TTY+IN A Sbjct: 53 TTYMINLA 60>NP_001191385 Length = 714 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTTYLINAA 9 G T+L+N+A Sbjct: 517 GKTFLVNSA 525>NP_066986 Length = 714 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTTYLINAA 9 G T+L+N+A Sbjct: 517 GKTFLVNSA 525>NP_001184113 Length = 333 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 T YLINA+ Sbjct: 7 TDYLINAS 14>NP_061759 Length = 798 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTTYLINAA 9 GTT+LI A Sbjct: 151 GTTFLIERA 159>NP_945189 Length = 548 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT YL+N Sbjct: 525 GTKYLLN 531>NP_004604 Length = 687 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT YL+N Sbjct: 525 GTKYLLN 531>NP_478129 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 +TYL+N A Sbjct: 125 STYLVNQA 132>XP_005270164 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 +TYL+N A Sbjct: 125 STYLVNQA 132>NP_001273171 Length = 2084 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 T+Y+IN A Sbjct: 1134 TSYIINQA 1141>NP_001511 Length = 2109 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 T+Y+IN A Sbjct: 1134 TSYIINQA 1141>NP_001258733 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT Y++N Sbjct: 202 GTRYMVN 208>NP_002616 Length = 471 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT Y++N Sbjct: 224 GTRYMVN 230>NP_573439 Length = 1436 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>NP_573438 Length = 1440 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>NP_001181930 Length = 1433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>NP_005695 Length = 1446 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>NP_002502 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 GTTYLINAA 9 GT+YL++++ Sbjct: 350 GTSYLLSSS 358>NP_001258734 Length = 406 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT Y++N Sbjct: 159 GTRYMVN 165>XP_005262071 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GT Y++N Sbjct: 201 GTRYMVN 207>XP_006721105 Length = 2046 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 T+Y+IN A Sbjct: 1134 TSYIINQA 1141>XP_006712514 Length = 2496 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TTYLINAA 9 T YL+N+A Sbjct: 2485 TRYLLNSA 2492>XP_006710336 Length = 1177 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 295 GTTYLFS 301>XP_006710335 Length = 1370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 488 GTTYLFS 494>XP_006710334 Length = 1292 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>XP_006710333 Length = 1439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566>XP_006710332 Length = 1442 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTTYLIN 7 GTTYL + Sbjct: 560 GTTYLFS 566Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.128 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 445,638 Number of extensions: 564 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |