Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001119588 18 1135 NP_001119587 18 1135 NP_001119589 18 1135 NP_660350 17 2528 XP_006717758 17 2528 NP_059138 17 3301 NP_001139281 17 3301 NP_001070654 17 3301 NP_079005 17 3301 XP_006723449 17 3301 NP_003142 16 5631 NP_001230764 16 5631 NP_001013680 16 5631 XP_006712782 16 5631 XP_005246874 16 5631 NP_612486 16 7355 XP_005254235 16 7355 XP_005254233 16 7355 XP_005254234 16 7355 XP_006714302 16 7355 XP_005263127 16 7355 NP_061908 16 7355 NP_001245258 15 9605 NP_001245260 15 9605 NP_001245259 15 9605 NP_818932 15 9605 NP_036288 15 9605 XP_005260382 15 9605 XP_005260381 15 9605 XP_006723804 15 9605 XP_005260380 15 9605 XP_006723803 15 9605 XP_005260379 15 9605 XP_005260378 15 9605 XP_005260377 15 9605 XP_006723802 15 9605 XP_005260376 15 9605 XP_006723801 15 9605 XP_006723800 15 9605 XP_006723799 15 9605 XP_006723798 15 9605 XP_005251493 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 154 GTRVRAMAI 162>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 115 GTRVRAMAI 123>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 154 GTRVRAMAI 162>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 154 GTRVRAMAI 162>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 115 GTRVRAMAI 123>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 115 GTRVRAMAI 123>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 115 GTRVRAMAI 123>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 154 GTRVRAMAI 162>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 115 GTRVRAMAI 123>NP_001119588 Length = 209 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 22 GTRVRAMAI 30>NP_001119587 Length = 261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 22 GTRVRAMAI 30>NP_001119589 Length = 214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTRVRAM I Sbjct: 22 GTRVRAMAI 30>NP_660350 Length = 609 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TRVRAMD 8 TR+RAMD Sbjct: 342 TRIRAMD 348>XP_006717758 Length = 630 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TRVRAMD 8 TR+RAMD Sbjct: 363 TRIRAMD 369>NP_059138 Length = 1032 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 GTR+R +D+ Sbjct: 700 GTRLRRLDV 708>NP_001139281 Length = 2036 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GTRVRAMD 8 G+RVRAM+ Sbjct: 1393 GSRVRAME 1400>NP_001070654 Length = 2003 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GTRVRAMD 8 G+RVRAM+ Sbjct: 1360 GSRVRAME 1367>NP_079005 Length = 1995 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GTRVRAMD 8 G+RVRAM+ Sbjct: 1352 GSRVRAME 1359>XP_006723449 Length = 2003 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GTRVRAMD 8 G+RVRAM+ Sbjct: 1360 GSRVRAME 1367>NP_003142 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRAMDI 9 GT V+AM I Sbjct: 379 GTNVKAMSI 387>NP_001230764 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRAMDI 9 GT V+AM I Sbjct: 379 GTNVKAMSI 387>NP_001013680 Length = 473 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRVRAMDI 9 TR+RA+D+ Sbjct: 115 TRLRALDL 122>XP_006712782 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRAMDI 9 GT V+AM I Sbjct: 379 GTNVKAMSI 387>XP_005246874 Length = 757 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRAMDI 9 GT V+AM I Sbjct: 388 GTNVKAMSI 396>NP_612486 Length = 1227 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVRAM 7 G+R+RAM Sbjct: 482 GSRIRAM 488>XP_005254235 Length = 1017 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVRAM 7 G+R+RAM Sbjct: 483 GSRIRAM 489>XP_005254233 Length = 1228 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVRAM 7 G+R+RAM Sbjct: 483 GSRIRAM 489>XP_005254234 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVRAM 7 G+R+RAM Sbjct: 483 GSRIRAM 489>XP_006714302 Length = 916 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TRVRAMD 8 TR+RA+D Sbjct: 601 TRIRAID 607>XP_005263127 Length = 1134 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TRVRAMD 8 TR+RA+D Sbjct: 601 TRIRAID 607>NP_061908 Length = 1135 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TRVRAMD 8 TR+RA+D Sbjct: 601 TRIRAID 607>NP_001245258 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>NP_001245260 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 645 TRVSAMD 651>NP_001245259 Length = 701 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 539 TRVSAMD 545>NP_818932 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 645 TRVSAMD 651>NP_036288 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_005260382 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 570 TRVSAMD 576>XP_005260381 Length = 744 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 582 TRVSAMD 588>XP_006723804 Length = 819 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 657 TRVSAMD 663>XP_005260380 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 707 TRVSAMD 713>XP_006723803 Length = 853 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_005260379 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 706 TRVSAMD 712>XP_005260378 Length = 868 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 707 TRVSAMD 713>XP_005260377 Length = 869 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 707 TRVSAMD 713>XP_006723802 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 718 TRVSAMD 724>XP_005260376 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_006723801 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_006723800 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_006723799 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 719 TRVSAMD 725>XP_006723798 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TRVRAMD 8 TRV AMD Sbjct: 782 TRVSAMD 788>XP_005251493 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVRAMDI 9 G+R R++DI Sbjct: 9 GSRSRSLDI 17Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.142 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 326,618 Number of extensions: 612 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |