Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1482 NP_001263689 18 1482 NP_001119584 18 1482 NP_001119586 18 1482 NP_001263625 18 1482 NP_001119590 18 1482 NP_001263690 18 1482 NP_001119585 18 1482 NP_001263624 18 1482 NP_001119588 18 1482 NP_001119587 18 1482 NP_001119589 18 1482 NP_003171 16 7355 XP_006723405 16 7355 XP_006723404 16 7355 XP_006723403 16 7355 XP_006723402 16 7355 XP_006723401 16 7355 NP_110380 15 9605 NP_001159403 15 9605 NP_001025 15 9605 NP_001244202 15 9605>NP_000537 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263689 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119584 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001119586 Length = 341 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263625 Length = 302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119590 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001263690 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119585 Length = 346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263624 Length = 307 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119588 Length = 209 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_001119587 Length = 261 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_001119589 Length = 214 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVLAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_003171 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 187 GGRVLVMAV 195>XP_006723405 Length = 382 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 184 GGRVLVMAV 192>XP_006723404 Length = 383 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 184 GGRVLVMAV 192>XP_006723403 Length = 385 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 187 GGRVLVMAV 195>XP_006723402 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 187 GGRVLVMAV 195>XP_006723401 Length = 386 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVLAMAI 9 G RVL MA+ Sbjct: 187 GGRVLVMAV 195>NP_110380 Length = 355 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GTRVLA 6 GTRVLA Sbjct: 16 GTRVLA 21>NP_001159403 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GTRVLA 6 GTRVLA Sbjct: 99 GTRVLA 104>NP_001025 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GTRVLA 6 GTRVLA Sbjct: 39 GTRVLA 44>NP_001244202 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RVLAMAI 9 RV+AMAI Sbjct: 447 RVMAMAI 453Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.139 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 213,446 Number of extensions: 122 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |