Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 21 229 XP_005262424 21 229 NP_008986 20 299 XP_006717660 20 299 NP_004091 18 1482 NP_742103 18 1482 NP_742101 18 1482 XP_006715436 18 1482 XP_005266910 18 1482 XP_005266909 18 1482 XP_005266908 18 1482 XP_005266907 18 1482 NP_835237 17 2528 NP_115687 17 2528 NP_001265586 17 2528 NP_001005487 17 3301 NP_659404 17 4312 NP_001269536 17 4312 NP_001271226 17 4312 NP_001271227 17 4312 XP_006724792 17 4312 XP_005254507 17 4312 XP_005254506 17 4312 XP_005254505 17 4312 XP_006720635 17 4312 XP_006720634 17 4312 NP_997290 17 4312 NP_004564 17 4312 NP_001092314 16 5631 NP_001108603 16 7355 NP_000056 16 7355 NP_694984 16 7355 NP_005119 16 7355 NP_079111 16 7355 XP_005276966 16 7355 XP_006724701 16 7355 XP_005262172 16 7355 XP_005262170 16 7355 XP_006724131 16 7355 XP_005257746 16 7355 XP_006714560 16 7355 XP_005248414 16 7355 XP_005248413 16 7355 XP_006714559 16 7355 XP_006712581 16 7355 XP_005246132 16 7355 NP_001073973 16 7355>NP_722576 Length = 3080 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTRMTSNNT 9 GTRMTS+NT Sbjct: 1867 GTRMTSSNT 1875>XP_005262424 Length = 2875 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTRMTSNNT 9 GTRMTS+NT Sbjct: 1662 GTRMTSSNT 1670>NP_008986 Length = 1390 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRMTSNNT 9 GTR TSNNT Sbjct: 1243 GTRTTSNNT 1251>XP_006717660 Length = 1369 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRMTSNNT 9 GTR TSNNT Sbjct: 1222 GTRTTSNNT 1230>NP_004091 Length = 639 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 291 GAYMTSNNT 299>NP_742103 Length = 639 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 291 GAYMTSNNT 299>NP_742101 Length = 616 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 268 GAYMTSNNT 276>XP_006715436 Length = 585 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 237 GAYMTSNNT 245>XP_005266910 Length = 616 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 268 GAYMTSNNT 276>XP_005266909 Length = 620 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 291 GAYMTSNNT 299>XP_005266908 Length = 645 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 291 GAYMTSNNT 299>XP_005266907 Length = 645 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 G MTSNNT Sbjct: 291 GAYMTSNNT 299>NP_835237 Length = 392 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GT+MT NN Sbjct: 250 GTKMTVNN 257>NP_115687 Length = 421 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GT+MT NN Sbjct: 279 GTKMTVNN 286>NP_001265586 Length = 438 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GT+MT NN Sbjct: 296 GTKMTVNN 303>NP_001005487 Length = 307 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 GT +TS NT Sbjct: 80 GTMLTSENT 88>NP_659404 Length = 547 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTRMTSNN 8 G RMTS N Sbjct: 371 GNRMTSTN 378>NP_001269536 Length = 535 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTRMTSNN 8 G RMTS N Sbjct: 359 GNRMTSTN 366>NP_001271226 Length = 1181 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 603 GTRMDSSN 610>NP_001271227 Length = 1170 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>XP_006724792 Length = 411 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTRMTSNN 8 G RMTS N Sbjct: 235 GNRMTSTN 242>XP_005254507 Length = 1070 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>XP_005254506 Length = 1123 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>XP_005254505 Length = 1124 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>XP_006720635 Length = 1125 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>XP_006720634 Length = 1184 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>NP_997290 Length = 438 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 G RMTS+N Sbjct: 187 GIRMTSSN 194>NP_004564 Length = 1185 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 GTRM S+N Sbjct: 607 GTRMDSSN 614>NP_001092314 Length = 351 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRMTSNNT 9 GTR S+NT Sbjct: 37 GTRARSDNT 45>NP_001108603 Length = 934 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 850 TRLSSNST 857>NP_000056 Length = 934 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 850 TRLSSNST 857>NP_694984 Length = 1802 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TRMTSNN 8 T+MT NN Sbjct: 407 TKMTGNN 413>NP_005119 Length = 2298 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GTRMTSNN 8 G+R+TS+N Sbjct: 947 GSRVTSHN 954>NP_079111 Length = 697 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRMTSNNT 9 G R TS NT Sbjct: 559 GNRETSGNT 567>XP_005276966 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRMTSNNT 9 G R TS NT Sbjct: 561 GNRETSGNT 569>XP_006724701 Length = 1398 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TRMTSNN 8 T+MT NN Sbjct: 3 TKMTGNN 9>XP_005262172 Length = 1631 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TRMTSNN 8 T+MT NN Sbjct: 236 TKMTGNN 242>XP_005262170 Length = 1752 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 TRMTSNN 8 T+MT NN Sbjct: 407 TKMTGNN 413>XP_006724131 Length = 2298 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GTRMTSNN 8 G+R+TS+N Sbjct: 947 GSRVTSHN 954>XP_005257746 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRMTSNNT 9 G R TS NT Sbjct: 561 GNRETSGNT 569>XP_006714560 Length = 814 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 730 TRLSSNST 737>XP_005248414 Length = 943 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 859 TRLSSNST 866>XP_005248413 Length = 953 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 869 TRLSSNST 876>XP_006714559 Length = 962 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TRMTSNNT 9 TR++SN+T Sbjct: 878 TRLSSNST 885>XP_006712581 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 G R++SNN Sbjct: 912 GNRISSNN 919>XP_005246132 Length = 1047 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 G R++SNN Sbjct: 912 GNRISSNN 919>NP_001073973 Length = 1052 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTRMTSNN 8 G R++SNN Sbjct: 917 GNRISSNN 924Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.106 0.281 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 488,380 Number of extensions: 893 Number of successful extensions: 47 Number of sequences better than 10000.0: 47 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 47 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |