Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 869 XP_005262424 19 869 NP_002606 17 3301 NP_849161 17 4312 NP_055976 16 5631 NP_689818 16 5631 NP_005848 16 5631 XP_006723134 16 5631 XP_006723133 16 5631 XP_006723132 16 5631 XP_006723131 16 5631 XP_006723130 16 5631 XP_006723129 16 5631 NP_037506 16 7355 NP_001155901 16 7355 NP_001243121 16 7355 NP_056379 16 7355 NP_055851 15 9605 NP_003974 15 9605 NP_001070253 15 9605 NP_056042 15 9605 NP_598368 15 9605 XP_006724047 15 9605 XP_006724044 15 9605 XP_006718055 15 9605 XP_006718054 15 9605 XP_005270249 15 9605 XP_006718053 15 9605 XP_005270248 15 9605 NP_112189 15 9605>NP_722576 Length = 3080 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 GTMSL FLL Sbjct: 2941 GTMSLTFLL 2949>XP_005262424 Length = 2875 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 GTMSL FLL Sbjct: 2736 GTMSLTFLL 2744>NP_002606 Length = 418 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G+MS+IF L Sbjct: 270 GSMSIIFFL 278>NP_849161 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GTMSLIF 7 GTM+LIF Sbjct: 431 GTMALIF 437>NP_055976 Length = 203 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 50 GVVSLVFLI 58>NP_689818 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>NP_005848 Length = 475 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TMSLIFLL 9 T SL+FLL Sbjct: 121 TQSLVFLL 128>XP_006723134 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>XP_006723133 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>XP_006723132 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>XP_006723131 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>XP_006723130 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>XP_006723129 Length = 327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMSLIFLL 9 G +SL+FL+ Sbjct: 235 GRLSLVFLI 243>NP_037506 Length = 868 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTMSLIFL 8 GT+SLI L Sbjct: 185 GTLSLIML 192>NP_001155901 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTMSLIFL 8 GT+SLI L Sbjct: 185 GTLSLIML 192>NP_001243121 Length = 271 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTMSLIFL 8 GT+SLI L Sbjct: 185 GTLSLIML 192>NP_056379 Length = 516 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMSLIF 7 GTM+L+F Sbjct: 426 GTMALLF 432>NP_055851 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMSLIF 7 GT+SL+F Sbjct: 461 GTVSLLF 467>NP_003974 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMSLIFLL 9 TM+LI+L+ Sbjct: 375 TMALIYLI 382>NP_001070253 Length = 515 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMSLIFLL 9 TM+LI+L+ Sbjct: 375 TMALIYLI 382>NP_056042 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TMSLIFLL 9 T+S +FLL Sbjct: 3 TLSFVFLL 10>NP_598368 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TMSLIFLL 9 T+S +FLL Sbjct: 3 TLSFVFLL 10>XP_006724047 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TMSLIFLL 9 T+S +FLL Sbjct: 3 TLSFVFLL 10>XP_006724044 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TMSLIFLL 9 T+S +FLL Sbjct: 3 TLSFVFLL 10>XP_006718055 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 96 GTIVLIFFL 104>XP_006718054 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 96 GTIVLIFFL 104>XP_005270249 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 96 GTIVLIFFL 104>XP_006718053 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 103 GTIVLIFFL 111>XP_005270248 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 132 GTIVLIFFL 140>NP_112189 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMSLIFLL 9 GT+ LIF L Sbjct: 96 GTIVLIFFL 104Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.156 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 320,106 Number of extensions: 496 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |