Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_001129490 17 4312 NP_001278092 17 4312 NP_000111 17 4312 NP_061836 17 4312 NP_387505 17 4312 XP_005261051 17 4312 NP_001135780 17 4312 NP_055449 16 5631 NP_001073918 16 5631 XP_006717743 16 5631 NP_001273768 16 7355 NP_005757 16 7355 XP_006719976 16 7355 NP_001171601 15 9605 NP_001954 15 9605 NP_001171602 15 9605 NP_689725 15 9605 XP_006724216 15 9605 XP_006724215 15 9605 XP_006724214 15 9605 XP_006724213 15 9605 XP_006724212 15 9605 XP_005262859 15 9605 XP_005262858 15 9605 XP_005262857 15 9605 XP_005262856 15 9605 XP_006714188 15 9605 XP_006714187 15 9605 XP_005262855 15 9605 XP_005262854 15 9605 XP_005262853 15 9605>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2490 GTMPSQERF 2498>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2506 GTMPSQERF 2514>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GTM SQERF Sbjct: 2507 GTMPSQERF 2515>NP_001129490 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT++S +RF Sbjct: 365 GTIISSQRF 373>NP_001278092 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT++S +RF Sbjct: 365 GTIISSQRF 373>NP_000111 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT++S +RF Sbjct: 365 GTIISSQRF 373>NP_061836 Length = 2320 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT+LSQE + Sbjct: 1084 GTVLSQEPY 1092>NP_387505 Length = 2269 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT+LSQE + Sbjct: 1084 GTVLSQEPY 1092>XP_005261051 Length = 2242 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTMLSQERF 9 GT+LSQE + Sbjct: 1006 GTVLSQEPY 1014>NP_001135780 Length = 2156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTMLSQERF 9 GT+LSQ F Sbjct: 406 GTLLSQRSF 414>NP_055449 Length = 454 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQE Sbjct: 46 GTVLSQE 52>NP_001073918 Length = 1060 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TMLSQER 8 T+LSQER Sbjct: 318 TLLSQER 324>XP_006717743 Length = 1090 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TMLSQER 8 T+LSQER Sbjct: 348 TLLSQER 354>NP_001273768 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTMLSQERF 9 GTM+ E F Sbjct: 729 GTMIKMENF 737>NP_005757 Length = 1045 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTMLSQERF 9 GTM+ E F Sbjct: 729 GTMIKMENF 737>XP_006719976 Length = 1045 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTMLSQERF 9 GTM+ E F Sbjct: 729 GTMIKMENF 737>NP_001171601 Length = 1166 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>NP_001954 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>NP_001171602 Length = 1165 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 462 GTLLSQQ 468>NP_689725 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 219 TMLSQE 224>XP_006724216 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 219 TMLSQE 224>XP_006724215 Length = 476 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 88 TMLSQE 93>XP_006724214 Length = 494 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 106 TMLSQE 111>XP_006724213 Length = 554 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 166 TMLSQE 171>XP_006724212 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TMLSQE 7 TMLSQE Sbjct: 219 TMLSQE 224>XP_005262859 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_005262858 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_005262857 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_005262856 Length = 1061 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_006714188 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 421 GTLLSQQ 427>XP_006714187 Length = 1133 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_005262855 Length = 1134 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510>XP_005262854 Length = 1173 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 462 GTLLSQQ 468>XP_005262853 Length = 1215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTMLSQE 7 GT+LSQ+ Sbjct: 504 GTLLSQQ 510Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.132 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 412,128 Number of extensions: 678 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |