Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 20 390 NP_001087241 20 390 XP_005265799 20 390 XP_005265798 20 390 XP_005265797 20 390 NP_003560 17 2528 NP_112203 17 4312 NP_001138396 17 4312 NP_001185982 17 4312 NP_004247 17 4312 XP_005255663 17 4312 XP_005255661 17 4312 NP_001004127 16 5631 NP_001136122 16 5631 NP_612403 16 5631 XP_006725220 16 5631 XP_006725219 16 5631 XP_006725218 16 5631 XP_006725216 16 5631 XP_005268354 16 5631 XP_005268353 16 5631 XP_005268352 16 5631 XP_006720025 16 5631 XP_005264697 16 5631 XP_005264696 16 5631 NP_660291 16 5631 NP_001171479 16 7355 NP_001171480 16 7355 NP_002658 16 7355 NP_000062 16 7355 NP_705839 16 7355 NP_001154926 16 7355 NP_001154924 16 7355 NP_009119 16 7355 NP_001269220 16 7355 NP_694995 16 7355 NP_659441 16 7355 NP_001186224 16 7355 NP_001269222 16 7355 XP_006725181 16 7355 XP_006725180 16 7355 XP_006724120 16 7355 XP_006723989 16 7355 XP_006723191 16 7355 XP_006718529 16 7355 XP_006718528 16 7355 XP_006718527 16 7355 XP_006716362 16 7355 XP_006716361 16 7355 XP_006710015 16 7355 XP_006710014 16 7355 XP_005275768 16 7355 NP_008966 15 9605 NP_001182207 15 9605 XP_005267399 15 9605 XP_006719964 15 9605 XP_006719963 15 9605 XP_006719962 15 9605 XP_006719961 15 9605 XP_006719960 15 9605 XP_005266656 15 9605 NP_004285 15 9605>NP_000213 Length = 976 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 G MCIIVMI Sbjct: 534 GMMCIIVMI 542>NP_001087241 Length = 972 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 G MCIIVMI Sbjct: 530 GMMCIIVMI 538>XP_005265799 Length = 973 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 G MCIIVMI Sbjct: 531 GMMCIIVMI 539>XP_005265798 Length = 976 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 G MCIIVMI Sbjct: 535 GMMCIIVMI 543>XP_005265797 Length = 977 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 G MCIIVMI Sbjct: 535 GMMCIIVMI 543>NP_003560 Length = 261 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMCIIVMI 9 T+CII++I Sbjct: 237 TLCIIILI 244>NP_112203 Length = 774 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GTMCIIVM 8 GT+C+I++ Sbjct: 736 GTLCLILL 743>NP_001138396 Length = 743 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GTMCIIVM 8 GT+C+I++ Sbjct: 705 GTLCLILL 712>NP_001185982 Length = 774 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GTMCIIVM 8 GT+C+I++ Sbjct: 736 GTLCLILL 743>NP_004247 Length = 551 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 G MCII++ Sbjct: 401 GLMCIIII 408>XP_005255663 Length = 743 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GTMCIIVM 8 GT+C+I++ Sbjct: 705 GTLCLILL 712>XP_005255661 Length = 774 Score = 16.5 bits (31), Expect = 4312 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GTMCIIVM 8 GT+C+I++ Sbjct: 736 GTLCLILL 743>NP_001004127 Length = 492 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C+ ++I Sbjct: 29 GTLCVCLVI 37>NP_001136122 Length = 537 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++M+ Sbjct: 95 GTICYVMMM 103>NP_612403 Length = 542 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++M+ Sbjct: 100 GTICYVMMM 108>XP_006725220 Length = 127 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_006725219 Length = 146 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_006725218 Length = 176 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_006725216 Length = 212 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_005268354 Length = 127 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_005268353 Length = 146 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_005268352 Length = 176 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_006720025 Length = 212 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 25 GTLCFVLLL 33>XP_005264697 Length = 590 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++M+ Sbjct: 95 GTICYVMMM 103>XP_005264696 Length = 595 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++M+ Sbjct: 100 GTICYVMMM 108>NP_660291 Length = 195 Score = 16.2 bits (30), Expect = 5631 Identities = 3/9 (33%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+C ++++ Sbjct: 8 GTLCFVLLL 16>NP_001171479 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CIIVM Sbjct: 162 GYRCIIVM 169>NP_001171480 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CIIVM Sbjct: 162 GYRCIIVM 169>NP_002658 Length = 52 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MCIIVMI 9 +CIIVM+ Sbjct: 45 ICIIVML 51>NP_000062 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CIIVM Sbjct: 162 GYRCIIVM 169>NP_705839 Length = 242 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 17 GSMCILFTI 25>NP_001154926 Length = 259 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 34 GSMCILFTI 42>NP_001154924 Length = 242 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 17 GSMCILFTI 25>NP_009119 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CI+VM Sbjct: 658 GAHCIVVM 665>NP_001269220 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CI+VM Sbjct: 675 GAHCIVVM 682>NP_694995 Length = 627 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MCIIVM 8 MCI+VM Sbjct: 95 MCILVM 100>NP_659441 Length = 787 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 GTMCI 5 GTMCI Sbjct: 292 GTMCI 296>NP_001186224 Length = 640 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MCIIVM 8 MCI+VM Sbjct: 108 MCILVM 113>NP_001269222 Length = 630 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CI+VM Sbjct: 570 GAHCIVVM 577>XP_006725181 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 GTMCI 5 GTMCI Sbjct: 292 GTMCI 296>XP_006725180 Length = 774 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 GTMCI 5 GTMCI Sbjct: 292 GTMCI 296>XP_006724120 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CIIVM Sbjct: 162 GYRCIIVM 169>XP_006723989 Length = 551 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTMCIIVM 8 G CIIVM Sbjct: 162 GYRCIIVM 169>XP_006723191 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 MCIIVM 8 MCI+VM Sbjct: 86 MCILVM 91>XP_006718529 Length = 135 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 17 GSMCILFTI 25>XP_006718528 Length = 161 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 17 GSMCILFTI 25>XP_006718527 Length = 263 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 G+MCI+ I Sbjct: 17 GSMCILFTI 25>XP_006716362 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 GTMCI 5 GTMCI Sbjct: 292 GTMCI 296>XP_006716361 Length = 774 Score = 15.8 bits (29), Expect = 7355 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 1 GTMCI 5 GTMCI Sbjct: 292 GTMCI 296>XP_006710015 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GT CI+++ Sbjct: 295 GTFCILLL 302>XP_006710014 Length = 407 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GT CI+++ Sbjct: 295 GTFCILLL 302>XP_005275768 Length = 630 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GT CI+++ Sbjct: 544 GTFCILLL 551>NP_008966 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GTMCIIVMI 9 GT+C I+ + Sbjct: 3 GTICFIMWV 11>NP_001182207 Length = 294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 GTMCII 6 GT CII Sbjct: 212 GTFCII 217>XP_005267399 Length = 352 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTMCIIVMI 9 GT+ +IV+I Sbjct: 62 GTISVIVLI 70>XP_006719964 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>XP_006719963 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>XP_006719962 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>XP_006719961 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>XP_006719960 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>XP_005266656 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285>NP_004285 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTMCIIVM 8 GTM +IV+ Sbjct: 278 GTMSVIVL 285Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.351 0.155 0.505 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 437,505 Number of extensions: 525 Number of successful extensions: 62 Number of sequences better than 10000.0: 62 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 62 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |