Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 20 299 NP_001089 17 3301 NP_001135820 17 4312 XP_005275697 17 4312 NP_000403 16 7355 NP_001094385 16 7355 XP_005255865 16 7355 XP_006721206 16 7355 XP_005247472 16 7355 NP_001315 16 7355 NP_001028693 16 7355 NP_001028694 16 7355 NP_919268 16 7355 NP_056250 15 9605 NP_001275959 15 9605 NP_001026970 15 9605 NP_690866 15 9605 NP_839955 15 9605 NP_699172 15 9605 NP_001120833 15 9605 NP_001267468 15 9605 NP_001020095 15 9605 NP_002035 15 9605 NP_904355 15 9605 NP_002194 15 9605 NP_001105 15 9605 NP_001001556 15 9605 NP_001275960 15 9605 XP_005255842 15 9605 XP_006721191 15 9605 XP_005255841 15 9605 XP_005255840 15 9605 XP_005255839 15 9605 XP_005255837 15 9605 XP_005255838 15 9605 XP_005255836 15 9605 XP_006720525 15 9605 XP_005254337 15 9605 XP_006720524 15 9605 XP_005254336 15 9605 XP_005250911 15 9605 XP_005250910 15 9605 XP_005265807 15 9605 XP_006714105 15 9605 XP_005265805 15 9605 XP_005265804 15 9605 XP_006710421 15 9605 XP_006710420 15 9605 XP_005270517 15 9605 XP_006710419 15 9605 NP_060731 15 9605 NP_006764 15 9605>NP_004251 Length = 1208 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GTGVLVEFN 9 GTGVLVEF+ Sbjct: 1023 GTGVLVEFS 1031>NP_001089 Length = 780 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTGVLVEFN 9 GTG +VE++ Sbjct: 260 GTGAIVEYH 268>NP_001135820 Length = 94 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GTGVLVE 7 GTG+LVE Sbjct: 16 GTGLLVE 22>XP_005275697 Length = 124 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT V V+FN Sbjct: 5 GTAVRVDFN 13>NP_000403 Length = 525 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GTG V+F+ Sbjct: 191 GTGYFVDFS 199>NP_001094385 Length = 926 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G G LVEF+ Sbjct: 517 GPGSLVEFS 525>XP_005255865 Length = 917 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G G LVEF+ Sbjct: 517 GPGSLVEFS 525>XP_006721206 Length = 921 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G G LVEF+ Sbjct: 512 GPGSLVEFS 520>XP_005247472 Length = 533 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GTG V+F+ Sbjct: 191 GTGYFVDFS 199>NP_001315 Length = 431 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTGVLVEFN 9 GTG+ +EF+ Sbjct: 78 GTGIDLEFD 86>NP_001028693 Length = 431 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTGVLVEFN 9 GTG+ +EF+ Sbjct: 78 GTGIDLEFD 86>NP_001028694 Length = 431 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTGVLVEFN 9 GTG+ +EF+ Sbjct: 78 GTGIDLEFD 86>NP_919268 Length = 657 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G+G V+FN Sbjct: 554 GSGTKVQFN 562>NP_056250 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 467 GKGVRIEFD 475>NP_001275959 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 176 GTAKLIEFS 184>NP_001026970 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G+G +EFN Sbjct: 60 GSGFGIEFN 68>NP_690866 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G+G +EFN Sbjct: 60 GSGFGIEFN 68>NP_839955 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 856 GSGVTMEF 863>NP_699172 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 453 GKGVKIEFD 461>NP_001120833 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 452 GKGVKIEFD 460>NP_001267468 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 467 GKGVRIEFD 475>NP_001020095 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 871 GSGVTMEF 878>NP_002035 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 200 GTAKLIEFS 208>NP_904355 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 467 GKGVRIEFD 475>NP_002194 Length = 1181 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TGVLVEFN 9 TG++V+F+ Sbjct: 839 TGIVVDFS 846>NP_001105 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>NP_001001556 Length = 447 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 189 GTAKLIEFS 197>NP_001275960 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 176 GTAKLIEFS 184>XP_005255842 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 762 GVMVEFS 768>XP_006721191 Length = 908 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 790 GVMVEFS 796>XP_005255841 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_005255840 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_005255839 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_005255837 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_005255838 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_005255836 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GVLVEFN 9 GV+VEF+ Sbjct: 962 GVMVEFS 968>XP_006720525 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 176 GTAKLIEFS 184>XP_005254337 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 189 GTAKLIEFS 197>XP_006720524 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 200 GTAKLIEFS 208>XP_005254336 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 GT L+EF+ Sbjct: 200 GTAKLIEFS 208>XP_005250911 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 157 GKGVRIEFD 165>XP_005250910 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 467 GKGVRIEFD 475>XP_005265807 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 856 GSGVTMEF 863>XP_006714105 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 874 GSGVTMEF 881>XP_005265805 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 889 GSGVTMEF 896>XP_005265804 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 889 GSGVTMEF 896>XP_006710421 Length = 588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 453 GKGVKIEFD 461>XP_006710420 Length = 688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 453 GKGVKIEFD 461>XP_005270517 Length = 731 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 452 GKGVKIEFD 460>XP_006710419 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTGVLVEFN 9 G GV +EF+ Sbjct: 453 GKGVKIEFD 461>NP_060731 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTGVLVEF 8 G+GV +EF Sbjct: 871 GSGVTMEF 878>NP_006764 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTGVLV 6 GTGVL+ Sbjct: 251 GTGVLI 256Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.146 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 655,727 Number of extensions: 1322 Number of successful extensions: 52 Number of sequences better than 10000.0: 52 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 52 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |