Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 665 XP_006715292 19 665 NP_055616 18 1935 XP_006711879 18 1935 XP_005273329 18 1935 NP_060660 16 5631 NP_110415 16 5631 NP_789794 16 5631 NP_001244246 16 5631 NP_001136018 16 5631 NP_004045 16 5631 NP_361013 16 5631 XP_006722966 16 5631 XP_006722965 16 5631 XP_006722964 16 5631 XP_005251132 16 5631 XP_005263163 16 5631 NP_001129074 16 7355 NP_001073279 16 7355 NP_000395 16 7355 NP_001185739 16 7355 NP_003618 16 7355 XP_005259159 16 7355 XP_005274415 16 7355 XP_005274414 16 7355 NP_065913 16 7355 NP_787050 15 9605 NP_001273171 15 9605 NP_001511 15 9605 NP_001139659 15 9605 NP_001139658 15 9605 NP_001139656 15 9605 NP_006201 15 9605 NP_001139657 15 9605 NP_056381 15 9605 XP_006721105 15 9605 XP_006719863 15 9605 XP_005266390 15 9605 XP_006719862 15 9605 XP_005266389 15 9605 XP_005248537 15 9605 XP_005248536 15 9605>NP_115927 Length = 1321 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTDAFLSTS 9 GTDA LSTS Sbjct: 314 GTDALLSTS 322>XP_006715292 Length = 759 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTDAFLSTS 9 GTDA LSTS Sbjct: 301 GTDALLSTS 309>NP_055616 Length = 2137 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 GTD FLS S Sbjct: 536 GTDVFLSKS 544>XP_006711879 Length = 1364 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 GTD FLS S Sbjct: 536 GTDVFLSKS 544>XP_005273329 Length = 1934 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 GTD FLS S Sbjct: 333 GTDVFLSKS 341>NP_060660 Length = 672 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G+D FLS S Sbjct: 118 GSDLFLSAS 126>NP_110415 Length = 470 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTDAFLS 7 GTD FLS Sbjct: 7 GTDIFLS 13>NP_789794 Length = 715 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G+D FLS S Sbjct: 118 GSDLFLSAS 126>NP_001244246 Length = 283 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTDAFLS 7 GTD FLS Sbjct: 7 GTDIFLS 13>NP_001136018 Length = 1076 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTDAFLST 8 G DAFLS+ Sbjct: 360 GEDAFLSS 367>NP_004045 Length = 482 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TDAFLST 8 +DAFLST Sbjct: 286 SDAFLST 292>NP_361013 Length = 1076 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTDAFLST 8 G DAFLS+ Sbjct: 360 GEDAFLSS 367>XP_006722966 Length = 492 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTDAFLST 8 G +AFLST Sbjct: 427 GPEAFLST 434>XP_006722965 Length = 536 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTDAFLST 8 G +AFLST Sbjct: 471 GPEAFLST 478>XP_006722964 Length = 581 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTDAFLST 8 G +AFLST Sbjct: 516 GPEAFLST 523>XP_005251132 Length = 470 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTDAFLS 7 GTD FLS Sbjct: 7 GTDIFLS 13>XP_005263163 Length = 716 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G+D FLS S Sbjct: 118 GSDLFLSAS 126>NP_001129074 Length = 546 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TDAFLS 7 TDAFLS Sbjct: 118 TDAFLS 123>NP_001073279 Length = 647 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TDAFLS 7 TDAFLS Sbjct: 219 TDAFLS 224>NP_000395 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TDAFLS 7 TDAFLS Sbjct: 249 TDAFLS 254>NP_001185739 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTDAFLS 7 G+DAF+S Sbjct: 271 GSDAFMS 277>NP_003618 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTDAFLS 7 G+DAF+S Sbjct: 271 GSDAFMS 277>XP_005259159 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DAFLST 8 DAFLST Sbjct: 158 DAFLST 163>XP_005274415 Length = 575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTDAFLS 7 G+DAF+S Sbjct: 287 GSDAFMS 293>XP_005274414 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTDAFLS 7 G+DAF+S Sbjct: 297 GSDAFMS 303>NP_065913 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DAFLST 8 DAFLST Sbjct: 158 DAFLST 163>NP_787050 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TDAFLSTS 9 TD++ STS Sbjct: 158 TDSYFSTS 165>NP_001273171 Length = 2084 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTDAFLSTS 9 G D FLS S Sbjct: 470 GEDTFLSES 478>NP_001511 Length = 2109 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTDAFLSTS 9 G D FLS S Sbjct: 470 GEDTFLSES 478>NP_001139659 Length = 1464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G DAF+ +S Sbjct: 566 GRDAFMQSS 574>NP_001139658 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G DAF+ +S Sbjct: 690 GRDAFMQSS 698>NP_001139656 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G DAF+ +S Sbjct: 690 GRDAFMQSS 698>NP_006201 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G DAF+ +S Sbjct: 690 GRDAFMQSS 698>NP_001139657 Length = 1462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTDAFLSTS 9 G DAF+ +S Sbjct: 564 GRDAFMQSS 572>NP_056381 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DAFLSTS 9 DAF STS Sbjct: 310 DAFASTS 316>XP_006721105 Length = 2046 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTDAFLSTS 9 G D FLS S Sbjct: 470 GEDTFLSES 478>XP_006719863 Length = 656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TDAFLSTS 9 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005266390 Length = 833 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TDAFLSTS 9 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_006719862 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TDAFLSTS 9 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005266389 Length = 886 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TDAFLSTS 9 TD++ STS Sbjct: 158 TDSYFSTS 165>XP_005248537 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DAFLSTS 9 DAF STS Sbjct: 310 DAFASTS 316>XP_005248536 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DAFLSTS 9 DAF STS Sbjct: 372 DAFASTS 378Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.120 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 482,748 Number of extensions: 913 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |