Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 18 1135 NP_001098675 17 4312 NP_001265156 17 4312 NP_001265159 17 4312 NP_055143 17 4312 NP_001265157 17 4312 XP_006711321 17 4312 XP_006711320 17 4312 XP_006711318 17 4312 XP_006711317 17 4312 NP_001098673 17 4312 NP_006006 15 9605 NP_624361 15 9605 NP_065783 15 9605 NP_059989 15 9605 NP_001269323 15 9605 XP_006717302 15 9605 XP_005252200 15 9605 XP_006717301 15 9605 XP_005252199 15 9605 XP_006717300 15 9605 XP_005252196 15 9605 XP_005252195 15 9605 XP_005252194 15 9605 XP_006715590 15 9605 XP_005267126 15 9605 XP_006715589 15 9605 XP_006715588 15 9605 XP_006715587 15 9605 XP_006715586 15 9605>NP_005179 Length = 906 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GTASKAAS 8 GTASKAAS Sbjct: 517 GTASKAAS 524>NP_001098675 Length = 492 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 298 GTSKEAASD 306>NP_001265156 Length = 400 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 206 GTSKEAASD 214>NP_001265159 Length = 433 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 239 GTSKEAASD 247>NP_055143 Length = 433 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 239 GTSKEAASD 247>NP_001265157 Length = 427 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 233 GTSKEAASD 241>XP_006711321 Length = 433 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 239 GTSKEAASD 247>XP_006711320 Length = 433 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 239 GTSKEAASD 247>XP_006711318 Length = 1039 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 845 GTSKEAASD 853>XP_006711317 Length = 1039 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 845 GTSKEAASD 853>NP_001098673 Length = 902 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GTASKAASD 9 GT+ +AASD Sbjct: 708 GTSKEAASD 716>NP_006006 Length = 2285 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1083 GTSSSAAS 1090>NP_624361 Length = 2068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1083 GTSSSAAS 1090>NP_065783 Length = 2249 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1132 GTSSSAAS 1139>NP_059989 Length = 2236 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1119 GTSSSAAS 1126>NP_001269323 Length = 2297 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2286 TASFAASD 2293>XP_006717302 Length = 2148 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2137 TASFAASD 2144>XP_005252200 Length = 2208 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2197 TASFAASD 2204>XP_006717301 Length = 2212 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2201 TASFAASD 2208>XP_005252199 Length = 2215 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2204 TASFAASD 2211>XP_006717300 Length = 2227 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2216 TASFAASD 2223>XP_005252196 Length = 2242 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2231 TASFAASD 2238>XP_005252195 Length = 2259 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2248 TASFAASD 2255>XP_005252194 Length = 2260 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TASKAASD 9 TAS AASD Sbjct: 2249 TASFAASD 2256>XP_006715590 Length = 2277 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1160 GTSSSAAS 1167>XP_005267126 Length = 2316 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1199 GTSSSAAS 1206>XP_006715589 Length = 2320 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1203 GTSSSAAS 1210>XP_006715588 Length = 2330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1213 GTSSSAAS 1220>XP_006715587 Length = 2359 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1242 GTSSSAAS 1249>XP_006715586 Length = 2373 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTASKAAS 8 GT+S AAS Sbjct: 1256 GTSSSAAS 1263Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.283 0.0964 0.227 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 218,359 Number of extensions: 313 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |