Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001180197 15 9605 NP_036287 15 9605 NP_001180198 15 9605 NP_689622 15 9605 XP_006723189 15 9605 XP_006723188 15 9605 XP_005271947 15 9605 XP_005271946 15 9605 NP_001129058 15 9605 NP_002144 15 9605>NP_001180197 Length = 850 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GSTKAAVFS 9 G TK +FS Sbjct: 208 GKTKEVIFS 216>NP_036287 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GSTKAAVFS 9 G TK +FS Sbjct: 7 GKTKEVIFS 15>NP_001180198 Length = 796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GSTKAAVFS 9 G TK +FS Sbjct: 154 GKTKEVIFS 162>NP_689622 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSTKAAVF 8 G+TKAA F Sbjct: 111 GTTKAAGF 118>XP_006723189 Length = 795 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GSTKAAVFS 9 G TK +FS Sbjct: 153 GKTKEVIFS 161>XP_006723188 Length = 849 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GSTKAAVFS 9 G TK +FS Sbjct: 207 GKTKEVIFS 215>XP_005271947 Length = 155 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSTKAAVF 8 G+TKAA F Sbjct: 111 GTTKAAGF 118>XP_005271946 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSTKAAVF 8 G+TKAA F Sbjct: 111 GTTKAAGF 118>NP_001129058 Length = 188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSTKAAVF 8 G+TKAA F Sbjct: 111 GTTKAAGF 118>NP_002144 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSTKAAV 7 GS+KAAV Sbjct: 233 GSSKAAV 239Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.113 0.284 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,407 Number of extensions: 361 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |