Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 19 869 NP_444254 19 869 NP_444253 19 869 NP_444255 19 869 XP_005247551 19 869 XP_005247550 19 869 XP_006713712 19 869 XP_005247549 19 869 NP_054777 17 3301 NP_065928 17 4312 XP_005256527 17 4312 NP_037514 16 5631 NP_001129242 16 5631 NP_001129241 16 5631 NP_001129240 16 5631 NP_006496 16 5631 NP_055816 16 7355 NP_542454 16 7355 NP_001073296 15 9605>NP_444256 Length = 1794 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1248 GSRQAQVNL 1256>NP_444254 Length = 1845 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1248 GSRQAQVNL 1256>NP_444253 Length = 1914 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1317 GSRQAQVNL 1325>NP_444255 Length = 1863 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1317 GSRQAQVNL 1325>XP_005247551 Length = 1855 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1258 GSRQAQVNL 1266>XP_005247550 Length = 1856 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1327 GSRQAQVNL 1335>XP_006713712 Length = 1923 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1327 GSRQAQVNL 1335>XP_005247549 Length = 1924 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GSRQAQV L Sbjct: 1327 GSRQAQVNL 1335>NP_054777 Length = 423 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 RQAQVTL 9 RQAQVTL Sbjct: 330 RQAQVTL 336>NP_065928 Length = 4427 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSRQAQVTL 9 GSRQAQ L Sbjct: 328 GSRQAQSNL 336>XP_005256527 Length = 4427 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSRQAQVTL 9 GSRQAQ L Sbjct: 328 GSRQAQSNL 336>NP_037514 Length = 750 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSRQAQVT 8 G+RQ QVT Sbjct: 367 GARQQQVT 374>NP_001129242 Length = 392 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GSRQAQVTL 9 G+RQA++T+ Sbjct: 319 GARQAELTV 327>NP_001129241 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GSRQAQVTL 9 G+RQA++T+ Sbjct: 319 GARQAELTV 327>NP_001129240 Length = 372 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GSRQAQVTL 9 G+RQA++T+ Sbjct: 319 GARQAELTV 327>NP_006496 Length = 417 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GSRQAQVTL 9 G+RQA++T+ Sbjct: 319 GARQAELTV 327>NP_055816 Length = 3664 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSRQAQVTL 9 GS++ +VTL Sbjct: 2317 GSKEVEVTL 2325>NP_542454 Length = 195 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GSRQAQ 6 GSRQAQ Sbjct: 9 GSRQAQ 14>NP_001073296 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSRQAQVTL 9 G RQ+Q T+ Sbjct: 77 GGRQSQFTI 85Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.119 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 342,965 Number of extensions: 436 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |