Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1482 NP_444254 18 1482 NP_444253 18 1482 NP_444255 18 1482 XP_005247551 18 1482 XP_005247550 18 1482 XP_006713712 18 1482 XP_005247549 18 1482 NP_001036009 17 2528 NP_065789 17 2528 NP_001036010 17 2528 NP_003564 17 2528 NP_003237 17 4312 NP_000058 16 7355 NP_060379 16 7355 NP_001265454 16 7355 NP_001265453 16 7355 NP_055618 16 7355 NP_001847 16 7355 XP_005276585 16 7355 XP_370934 16 7355 XP_005270538 16 7355 XP_001716413 16 7355 NP_001209 15 9605 NP_996808 15 9605 NP_001034864 15 9605 NP_079130 15 9605 XP_006726484 15 9605 XP_005258568 15 9605 XP_006719216 15 9605 XP_006715006 15 9605 XP_005245975 15 9605 XP_006710234 15 9605 NP_001135389 15 9605 NP_789781 15 9605>NP_444256 Length = 1794 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 390 GSQDVVSKA 398>NP_444254 Length = 1845 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 390 GSQDVVSKA 398>NP_444253 Length = 1914 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 390 GSQDVVSKA 398>NP_444255 Length = 1863 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 390 GSQDVVSKA 398>XP_005247551 Length = 1855 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 400 GSQDVVSKA 408>XP_005247550 Length = 1856 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 400 GSQDVVSKA 408>XP_006713712 Length = 1923 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 400 GSQDVVSKA 408>XP_005247549 Length = 1924 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSQHVVSKA 9 GSQ VVSKA Sbjct: 400 GSQDVVSKA 408>NP_001036009 Length = 1624 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SQHVVSKA 9 SQHV+S+A Sbjct: 398 SQHVISEA 405>NP_065789 Length = 1771 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GSQHVVSK 8 GSQH++S+ Sbjct: 1154 GSQHLISR 1161>NP_001036010 Length = 1557 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SQHVVSKA 9 SQHV+S+A Sbjct: 331 SQHVISEA 338>NP_003564 Length = 1587 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SQHVVSKA 9 SQHV+S+A Sbjct: 361 SQHVISEA 368>NP_003237 Length = 1170 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSQHVVS 7 G QHVVS Sbjct: 136 GKQHVVS 142>NP_000058 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 GS+H V K Sbjct: 104 GSEHTVDK 111>NP_060379 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQHVVSKA 9 S H++SKA Sbjct: 12 SHHILSKA 19>NP_001265454 Length = 1483 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 G QH+V K Sbjct: 452 GKQHIVLK 459>NP_001265453 Length = 1483 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 G QH+V K Sbjct: 452 GKQHIVLK 459>NP_055618 Length = 1483 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 G QH+V K Sbjct: 452 GKQHIVLK 459>NP_001847 Length = 1604 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GSQHVVS 7 G+QH+VS Sbjct: 564 GAQHLVS 570>XP_005276585 Length = 741 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GSQHVVS 7 G+QHVV+ Sbjct: 494 GAQHVVT 500>XP_370934 Length = 741 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GSQHVVS 7 G+QHVV+ Sbjct: 494 GAQHVVT 500>XP_005270538 Length = 1588 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GSQHVVS 7 G+QH+VS Sbjct: 564 GAQHLVS 570>XP_001716413 Length = 764 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GSQHVVS 7 G+QHVV+ Sbjct: 517 GAQHVVT 523>NP_001209 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSQHVVS 7 GS+H VS Sbjct: 130 GSEHTVS 136>NP_996808 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSQHVVS 7 GS+H VS Sbjct: 130 GSEHTVS 136>NP_001034864 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 GSQHVVSK 8 G QH++S+ Sbjct: 1406 GDQHILSE 1413>NP_079130 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 G+QHV K Sbjct: 102 GNQHVYKK 109>XP_006726484 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 HVVSKA 9 H+VSKA Sbjct: 64 HIVSKA 69>XP_005258568 Length = 1029 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSQHVVSK 8 GSQ +VSK Sbjct: 266 GSQDLVSK 273>XP_006719216 Length = 259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 G+QHV K Sbjct: 102 GNQHVYKK 109>XP_006715006 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 HVVSKA 9 H+VSKA Sbjct: 64 HIVSKA 69>XP_005245975 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 GSQHVVSK 8 G QH++S+ Sbjct: 1406 GDQHILSE 1413>XP_006710234 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 HVVSKA 9 H+VSKA Sbjct: 64 HIVSKA 69>NP_001135389 Length = 1335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GSQHVVSK 8 GS H VSK Sbjct: 987 GSAHSVSK 994>NP_789781 Length = 1048 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSQHVVSK 8 GSQ +VSK Sbjct: 266 GSQDLVSK 273Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.113 0.292 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 528,919 Number of extensions: 380 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |