Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 21 229 NP_001075109 21 229 XP_005263207 17 2528 NP_065775 17 2528 NP_112571 17 3301 NP_001182317 17 3301 NP_062550 16 5631 XP_006726449 16 5631 XP_006712222 16 5631 NP_001230013 16 7355 NP_851397 16 7355 NP_001521 16 7355 NP_079446 16 7355 NP_079146 16 7355 NP_057355 16 7355 NP_001178253 16 7355 XP_005258342 16 7355 NP_001167558 15 9605 NP_858045 15 9605 NP_006525 15 9605 NP_001020242 15 9605 NP_001020241 15 9605 NP_005608 15 9605 NP_001519 15 9605 NP_001129689 15 9605 NP_055589 15 9605 NP_060492 15 9605 NP_775871 15 9605 NP_004834 15 9605 XP_006714853 15 9605 XP_005248023 15 9605 XP_006710785 15 9605 XP_005245976 15 9605 XP_005276064 15 9605 NP_001129688 15 9605 NP_001129690 15 9605>NP_008835 Length = 4128 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GSNRTETVT 9 G+NRTETVT Sbjct: 3861 GANRTETVT 3869>NP_001075109 Length = 4097 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GSNRTETVT 9 G+NRTETVT Sbjct: 3830 GANRTETVT 3838>XP_005263207 Length = 460 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GSN ET+T Sbjct: 149 GSNTNETIT 157>NP_065775 Length = 438 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GSN ET+T Sbjct: 149 GSNTNETIT 157>NP_112571 Length = 977 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSNRTETVT 9 G+ R+ETVT Sbjct: 826 GAQRSETVT 834>NP_001182317 Length = 998 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSNRTETVT 9 G+ R+ETVT Sbjct: 826 GAQRSETVT 834>NP_062550 Length = 393 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SNRTETVT 9 +N TET+T Sbjct: 20 TNHTETIT 27>XP_006726449 Length = 799 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 GSN TET Sbjct: 375 GSNSTET 381>XP_006712222 Length = 799 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 GSN TET Sbjct: 375 GSNSTET 381>NP_001230013 Length = 850 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 GSN TET Sbjct: 438 GSNDTET 444>NP_851397 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 GSN TET Sbjct: 414 GSNDTET 420>NP_001521 Length = 826 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 GSN TET Sbjct: 414 GSNDTET 420>NP_079446 Length = 979 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GSN T+T T Sbjct: 236 GSNITDTCT 244>NP_079146 Length = 1606 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GSN T+T T Sbjct: 236 GSNITDTCT 244>NP_057355 Length = 245 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRTETVT 9 SNR+ET T Sbjct: 131 SNRSETST 138>NP_001178253 Length = 245 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRTETVT 9 SNR+ET T Sbjct: 131 SNRSETST 138>XP_005258342 Length = 199 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRTETVT 9 SNR+ET T Sbjct: 85 SNRSETST 92>NP_001167558 Length = 1423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GSNRTETVT 9 G NR TVT Sbjct: 904 GPNRNVTVT 912>NP_858045 Length = 1424 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GSNRTETVT 9 G NR TVT Sbjct: 904 GPNRNVTVT 912>NP_006525 Length = 1420 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GSNRTETVT 9 G NR TVT Sbjct: 904 GPNRNVTVT 912>NP_001020242 Length = 151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRT+T Sbjct: 101 GGNRTKT 107>NP_001020241 Length = 151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRT+T Sbjct: 101 GGNRTKT 107>NP_005608 Length = 151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRT+T Sbjct: 101 GGNRTKT 107>NP_001519 Length = 655 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRTE+ Sbjct: 38 GGNRTES 44>NP_001129689 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52>NP_055589 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SNRTETV 8 +NRT+TV Sbjct: 346 TNRTDTV 352>NP_060492 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52>NP_775871 Length = 8384 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GS++TE T Sbjct: 6421 GSSKTEATT 6429Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSNRTETVT 9 GS++TE T Sbjct: 6781 GSSKTEATT 6789>NP_004834 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SNRTETV 8 SN+T+TV Sbjct: 75 SNKTQTV 81>XP_006714853 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRT+T Sbjct: 101 GGNRTKT 107>XP_005248023 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRTE+ Sbjct: 38 GGNRTES 44>XP_006710785 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52>XP_005245976 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52>XP_005276064 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GSNRTET 7 G NRT+T Sbjct: 107 GGNRTKT 113>NP_001129688 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52>NP_001129690 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GSNRTE 6 GSN+TE Sbjct: 47 GSNKTE 52Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.108 0.271 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 444,333 Number of extensions: 1066 Number of successful extensions: 37 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |